RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 PLS1Q14651 629 aa14.6□□□□□ -0.07
USP38-201ENST00000307017 HYPKQ9NX55 129 aa14.6□□□□□ -0.07
USP38-201ENST00000307017 JAG2Q9Y219 1238 aa14.6□□□□□ -0.07
USP38-201ENST00000307017 GOLGA8AA7E2F4 631 aa14.6□□□□□ -0.07
USP38-201ENST00000307017 IFIT3O14879 490 aaKnown RBP14.6□□□□□ -0.07
USP38-201ENST00000307017 TMPOP42166 694 aaKnown RBP14.6□□□□□ -0.07
USP38-201ENST00000307017 NAPBQ9H115 298 aa14.6□□□□□ -0.07
USP38-201ENST00000307017 CEP57Q86XR8 500 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 SAMM50Q9Y512 469 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 ERCC3P19447 782 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 RNASE9P60153 205 aaKnown RBP14.59□□□□□ -0.07
USP38-201ENST00000307017 C17orf53Q8N3J3 647 aaPredicted RBP14.59□□□□□ -0.07
USP38-201ENST00000307017 GTF3C6Q969F1 213 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 TSG101Q99816 390 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 F8W031 263 aaPredicted RBP14.59□□□□□ -0.07
USP38-201ENST00000307017 RHOXF2BP0C7M4 288 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 RXRAP19793 462 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 RHOXF2Q9BQY4 288 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 KAT6BQ8WYB5 2073 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 ZSCAN12O43309 604 aa14.59□□□□□ -0.07
USP38-201ENST00000307017 A0A1W2PRG0 241 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 CCDC175P0C221 793 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 TTLL12Q14166 644 aaPredicted RBP14.58□□□□□ -0.08
USP38-201ENST00000307017 STAC3Q96MF2 364 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 ZBTB3Q9H5J0 574 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 VPS18Q9P253 973 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 KIF20AO95235 890 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 CCDC40Q4G0X9 1142 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 DNAI1Q9UI46 699 aa14.58□□□□□ -0.08
USP38-201ENST00000307017 NSD3Q9BZ95 1437 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 ZNF213O14771 459 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 SLFN5Q08AF3 891 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 C10orf67Q8IYJ2 551 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 TNNQ9UQP3 1299 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 ZEB2O60315 1214 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 IGHMBP2P38935 993 aaKnown RBP14.57□□□□□ -0.08
USP38-201ENST00000307017 DZIP1Q86YF9 867 aaKnown RBP14.57□□□□□ -0.08
USP38-201ENST00000307017 HOMER2Q9NSB8 354 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 NAA25Q14CX7 972 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 CEP131Q9UPN4 1083 aa14.57□□□□□ -0.08
USP38-201ENST00000307017 ZSCAN31Q96LW9 406 aaPredicted RBP14.56□□□□□ -0.08
USP38-201ENST00000307017 PTPRGP23470 1445 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 FGD6Q6ZV73 1430 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 BAG4O95429 457 aaKnown RBP14.56□□□□□ -0.08
USP38-201ENST00000307017 STX17P56962 302 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 FAM212AQ96EL1 285 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 DNAJC25Q9H1X3 360 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 AOPEPQ8N6M6 819 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 FERMT2Q96AC1 680 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 ADAMTS2O95450 1211 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 SYCP3Q8IZU3 236 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 DNAAF4Q8WXU2 420 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 KRT13P13646 458 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 IRX5P78411 483 aaPredicted RBP14.56□□□□□ -0.08
USP38-201ENST00000307017 USP48Q86UV5 1035 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 TMEM87AQ8NBN3 555 aa14.56□□□□□ -0.08
USP38-201ENST00000307017 GNAT3A8MTJ3 354 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 MAP9Q49MG5 647 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 ZSCAN25Q6NSZ9 544 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 ERBINQ96RT1 1412 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 CFTRP13569 1480 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 ERCC5P28715 1186 aaPredicted RBP14.55□□□□□ -0.08
USP38-201ENST00000307017 LONRF3Q496Y0 759 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 LZTFL1Q9NQ48 299 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 GCOM1H8Y6P7 765 aaPredicted RBP14.55□□□□□ -0.08
USP38-201ENST00000307017 MYZAPP0CAP1 466 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 ATRIPQ8WXE1 791 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 IFT81Q8WYA0 676 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 STX6O43752 255 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 YEATS4O95619 227 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 PAFAH1B1P43034 410 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 CALCOCO1Q9P1Z2 691 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 HSF2BPO75031 334 aa14.55□□□□□ -0.08
USP38-201ENST00000307017 SF3B2Q13435 895 aaKnown RBP14.55□□□□□ -0.08
USP38-201ENST00000307017 MAP3K9P80192 1104 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 HOOK3Q86VS8 718 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 CCDC25Q86WR0 208 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 MAP3K2Q9Y2U5 619 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 PPP1R14CQ8TAE6 165 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 ZBTB21Q9ULJ3 1066 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 CCDC63Q8NA47 563 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 USP16Q9Y5T5 823 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 TMEM67Q5HYA8 995 aa14.54□□□□□ -0.08
USP38-201ENST00000307017 UBASH3AP57075 661 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 DDX46Q7L014 1031 aaKnown RBP14.53□□□□□ -0.08
USP38-201ENST00000307017 CCDC186Q7Z3E2 898 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 ZNF444Q8N0Y2 327 aaPredicted RBP14.53□□□□□ -0.08
USP38-201ENST00000307017 OTUD6BQ8N6M0 293 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 EMILIN1Q9Y6C2 1016 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 NME9Q86XW9 330 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 BICD1Q96G01 975 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 ZNF165P49910 485 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 STX1AQ16623 288 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 U3KPZ7 1027 aaPredicted RBP14.53□□□□□ -0.08
USP38-201ENST00000307017 ANKRD50Q9ULJ7 1429 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 STAMBPO95630 424 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 PSMC4P43686 418 aa14.53□□□□□ -0.08
USP38-201ENST00000307017 RARSP54136 660 aaKnown RBP14.53□□□□□ -0.08
USP38-201ENST00000307017 RRAGBQ5VZM2 374 aa14.52□□□□□ -0.08
USP38-201ENST00000307017 CTNNA3Q9UI47 895 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms