RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 GTF2E1P29083 439 aaPredicted RBP18.55■□□□□ 0.56
TPM1-202ENST00000288398 TPTE2Q6XPS3 522 aa18.55■□□□□ 0.56
TPM1-202ENST00000288398 SMC1BQ8NDV3 1235 aa18.55■□□□□ 0.56
TPM1-202ENST00000288398 MASTLQ96GX5 879 aa18.55■□□□□ 0.56
TPM1-202ENST00000288398 NIP7Q9Y221 180 aaKnown RBP eCLIP18.55■□□□□ 0.56
TPM1-202ENST00000288398 NFKBIEO00221 500 aa18.54■□□□□ 0.56
TPM1-202ENST00000288398 VEGFAP15692 232 aaPredicted RBP18.54■□□□□ 0.56
TPM1-202ENST00000288398 TAOK3Q9H2K8 898 aa18.54■□□□□ 0.56
TPM1-202ENST00000288398 MIS18AQ9NYP9 233 aa18.54■□□□□ 0.56
TPM1-202ENST00000288398 SBF1O95248 1867 aa18.54■□□□□ 0.56
TPM1-202ENST00000288398 BCORQ6W2J9 1755 aa18.53■□□□□ 0.56
TPM1-202ENST00000288398 RGL2O15211 777 aa18.53■□□□□ 0.56
TPM1-202ENST00000288398 NFE2L2Q16236 605 aa18.53■□□□□ 0.56
TPM1-202ENST00000288398 ERFEQ4G0M1 354 aa18.53■□□□□ 0.56
TPM1-202ENST00000288398 PRPF40BQ6NWY9 871 aaKnown RBP18.53■□□□□ 0.56
TPM1-202ENST00000288398 FAM177BA6PVY3 158 aa18.52■□□□□ 0.56
TPM1-202ENST00000288398 SRGNP10124 158 aa18.52■□□□□ 0.56
TPM1-202ENST00000288398 KIF6Q6ZMV9 814 aa18.52■□□□□ 0.56
TPM1-202ENST00000288398 NGEFQ8N5V2 710 aa18.52■□□□□ 0.56
TPM1-202ENST00000288398 ANKRD31Q8N7Z5 1873 aa18.52■□□□□ 0.55
TPM1-202ENST00000288398 NBPF26B4DH59 902 aa18.51■□□□□ 0.55
TPM1-202ENST00000288398 NBPF10Q6P3W6 841 aaKnown RBP18.51■□□□□ 0.55
TPM1-202ENST00000288398 NBPF15Q8N660 670 aa18.51■□□□□ 0.55
TPM1-202ENST00000288398 COL11A2P13942 1736 aaPredicted RBP18.5■□□□□ 0.55
TPM1-202ENST00000288398 TIAM2Q8IVF5 1701 aa18.5■□□□□ 0.55
TPM1-202ENST00000288398 NPR1P16066 1061 aa18.5■□□□□ 0.55
TPM1-202ENST00000288398 LTBP3Q9NS15 1303 aa18.49■□□□□ 0.55
TPM1-202ENST00000288398 PRELPP51888 382 aa18.49■□□□□ 0.55
TPM1-202ENST00000288398 RALBP1Q15311 655 aa18.49■□□□□ 0.55
TPM1-202ENST00000288398 CCDC93Q567U6 631 aa18.49■□□□□ 0.55
TPM1-202ENST00000288398 NYXQ9GZU5 481 aa18.49■□□□□ 0.55
TPM1-202ENST00000288398 RRP7AQ9Y3A4 280 aaKnown RBP18.49■□□□□ 0.55
TPM1-202ENST00000288398 PLEKHF1Q96S99 279 aa18.48■□□□□ 0.55
TPM1-202ENST00000288398 LAMB4A4D0S4 1761 aa18.47■□□□□ 0.55
TPM1-202ENST00000288398 MYL6BP14649 208 aa18.47■□□□□ 0.55
TPM1-202ENST00000288398 EIF4A1P60842 406 aaKnown RBP18.47■□□□□ 0.55
TPM1-202ENST00000288398 LMOD3Q0VAK6 560 aa18.47■□□□□ 0.55
TPM1-202ENST00000288398 THUMPD2Q9BTF0 503 aaKnown RBP18.47■□□□□ 0.55
TPM1-202ENST00000288398 TSPYL4Q9UJ04 414 aa18.47■□□□□ 0.55
TPM1-202ENST00000288398 WDR90Q96KV7 1748 aa18.46■□□□□ 0.55
TPM1-202ENST00000288398 ERVV-1B6SEH8 477 aa18.46■□□□□ 0.55
TPM1-202ENST00000288398 ALDH1B1P30837 517 aa18.46■□□□□ 0.55
TPM1-202ENST00000288398 HLFQ16534 295 aa18.45■□□□□ 0.54
TPM1-202ENST00000288398 IFFO2Q5TF58 517 aa18.45■□□□□ 0.54
TPM1-202ENST00000288398 MAP3K15Q6ZN16 1313 aa18.45■□□□□ 0.54
TPM1-202ENST00000288398 CCDC88AQ3V6T2 1871 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 RIPK4P57078 832 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 HTRA3P83110 453 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 RTKN2Q8IZC4 609 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 DNAJC5GQ8N7S2 189 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 KLRG1Q96E93 195 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 DLG5Q8TDM6 1919 aa18.44■□□□□ 0.54
TPM1-202ENST00000288398 CACNA1SQ13698 1873 aa18.43■□□□□ 0.54
TPM1-202ENST00000288398 KDM3BQ7LBC6 1761 aa18.43■□□□□ 0.54
TPM1-202ENST00000288398 FKBP4Q02790 459 aaKnown RBP eCLIP18.43■□□□□ 0.54
TPM1-202ENST00000288398 RPGRQ92834 1020 aaKnown RBP18.43■□□□□ 0.54
TPM1-202ENST00000288398 ZBTB3Q9H5J0 574 aa18.43■□□□□ 0.54
TPM1-202ENST00000288398 SLX4Q8IY92 1834 aa18.43■□□□□ 0.54
TPM1-202ENST00000288398 FER1L6Q2WGJ9 1857 aa18.43■□□□□ 0.54
TPM1-202ENST00000288398 ERBB4Q15303 1308 aa18.43■□□□□ 0.54
TPM1-202ENST00000288398 IQCA1LA6NCM1 817 aa18.42■□□□□ 0.54
TPM1-202ENST00000288398 WDR43Q15061 677 aaKnown RBP eCLIP18.42■□□□□ 0.54
TPM1-202ENST00000288398 ARFGEF2Q9Y6D5 1785 aa18.42■□□□□ 0.54
TPM1-202ENST00000288398 KLRG2A4D1S0 409 aaPredicted RBP18.41■□□□□ 0.54
TPM1-202ENST00000288398 DDNO94850 711 aaPredicted RBP18.41■□□□□ 0.54
TPM1-202ENST00000288398 EIF2S2P20042 333 aaKnown RBP18.41■□□□□ 0.54
TPM1-202ENST00000288398 GPTP24298 496 aa18.41■□□□□ 0.54
TPM1-202ENST00000288398 TTLL7Q6ZT98 887 aa18.41■□□□□ 0.54
TPM1-202ENST00000288398 NUTM1Q86Y26 1132 aa18.41■□□□□ 0.54
TPM1-202ENST00000288398 TMX4Q9H1E5 349 aaPredicted RBP18.41■□□□□ 0.54
TPM1-202ENST00000288398 DDX10Q13206 875 aaKnown RBP18.4■□□□□ 0.54
TPM1-202ENST00000288398 PPP1R42Q7Z4L9 355 aa18.4■□□□□ 0.54
TPM1-202ENST00000288398 ZNF277Q9NRM2 450 aaPredicted RBP18.4■□□□□ 0.54
TPM1-202ENST00000288398 BABAM1Q9NWV8 329 aa18.4■□□□□ 0.54
TPM1-202ENST00000288398 MYBBP1AQ9BQG0 1328 aaKnown RBP18.4■□□□□ 0.54
TPM1-202ENST00000288398 DICER1Q9UPY3 1922 aaKnown RBP18.39■□□□□ 0.53
TPM1-202ENST00000288398 C7orf43Q8WVR3 580 aa18.39■□□□□ 0.53
TPM1-202ENST00000288398 IBTKQ9P2D0 1353 aaPredicted RBP18.39■□□□□ 0.53
TPM1-202ENST00000288398 TMPOP42166 694 aaKnown RBP18.38■□□□□ 0.53
TPM1-202ENST00000288398 NEUROD2Q15784 382 aa18.38■□□□□ 0.53
TPM1-202ENST00000288398 CC2D2BQ6DHV5 1058 aa18.38■□□□□ 0.53
TPM1-202ENST00000288398 CHADLQ6NUI6 762 aa18.38■□□□□ 0.53
TPM1-202ENST00000288398 JDP2Q8WYK2 163 aa18.38■□□□□ 0.53
TPM1-202ENST00000288398 PARP10Q53GL7 1025 aa18.37■□□□□ 0.53
TPM1-202ENST00000288398 GIGYF2Q6Y7W6 1299 aaKnown RBP18.37■□□□□ 0.53
TPM1-202ENST00000288398 RBM17Q96I25 401 aaKnown RBP18.37■□□□□ 0.53
TPM1-202ENST00000288398 ABCC12Q96J65 1359 aa18.37■□□□□ 0.53
TPM1-202ENST00000288398 POTECB2RU33 542 aa18.36■□□□□ 0.53
TPM1-202ENST00000288398 IARSP41252 1262 aaKnown RBP18.36■□□□□ 0.53
TPM1-202ENST00000288398 CRY2Q49AN0 593 aa18.36■□□□□ 0.53
TPM1-202ENST00000288398 GRIPAP1Q4V328 841 aa18.36■□□□□ 0.53
TPM1-202ENST00000288398 CCDC146Q8IYE0 955 aa18.36■□□□□ 0.53
TPM1-202ENST00000288398 SYNE4Q8N205 404 aa18.36■□□□□ 0.53
TPM1-202ENST00000288398 LAS1LQ9Y4W2 734 aaKnown RBP18.36■□□□□ 0.53
TPM1-202ENST00000288398 UBN2Q6ZU65 1347 aa18.35■□□□□ 0.53
TPM1-202ENST00000288398 HSP90AB3PQ58FF7 597 aa18.35■□□□□ 0.53
TPM1-202ENST00000288398 SUSD4Q5VX71 490 aa18.35■□□□□ 0.53
TPM1-202ENST00000288398 OLFM4Q6UX06 510 aa18.35■□□□□ 0.53
TPM1-202ENST00000288398 JMYQ8N9B5 988 aa18.35■□□□□ 0.53
TPM1-202ENST00000288398 NLRP3Q96P20 1036 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms