RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 PIBF1Q8WXW3 757 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 KDM4CQ9H3R0 1056 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 RABEP2Q9H5N1 569 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 MTMR7Q9Y216 660 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 PLCH2O75038 1416 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 CEP170Q5SW79 1584 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 KIF7Q2M1P5 1343 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 RPGRIP1LQ68CZ1 1315 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 ATP2B3Q16720 1220 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 CEP85LQ5SZL2 805 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 TRIM11Q96F44 468 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 RBM27Q9P2N5 1060 aaKnown RBP7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 CCDC171Q6TFL3 1326 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 ARHGAP25P42331 645 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 ZKSCAN2Q63HK3 967 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 TTC19Q6DKK2 380 aaPredicted RBP7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 FANCAO15360 1455 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 PRPHP41219 470 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 B4GALNT4Q76KP1 1039 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 PRPF38AQ8NAV1 312 aaKnown RBP7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 TBC1D22AQ8WUA7 517 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 ERO1AQ96HE7 468 aa7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 JPH2Q9BR39 696 aaPredicted RBP7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 HOOK1Q9UJC3 728 aaKnown RBP7.8□□□□□ -1.16
PDGFRA-201ENST00000257290 CGNL1Q0VF96 1302 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 DNAJC8O75937 253 aaPredicted RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 MCM3P25205 808 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 TPP2P29144 1249 aaPredicted RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 ARL10Q8N8L6 244 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 CTCFLQ8NI51 663 aaPredicted RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 ABCC2Q92887 1545 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 SYCE3A1L190 88 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 SMIM24O75264 130 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 VCAM1P19320 739 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 VCXQ9H320 206 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 SLC52A1Q9NWF4 448 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 SHANK2Q9UPX8 1470 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 WDR7Q9Y4E6 1490 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 ANKRD30BQ9BXX2 1392 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 WDHD1O75717 1129 aaPredicted RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 FILIP1LQ4L180 1135 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 ANKRD13AQ8IZ07 590 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 VPS18Q9P253 973 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 IKBKGQ9Y6K9 419 aa7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 BUB1BO60566 1050 aaPredicted RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 DYNC1I2Q13409 638 aaKnown RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 BIN2Q9UBW5 565 aaPredicted RBP7.79□□□□□ -1.16
PDGFRA-201ENST00000257290 SNUPNO95149 360 aaKnown RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 PAX3P23760 479 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 DAAM2Q86T65 1068 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 FAM76AQ8TAV0 307 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 FSD2A1L4K1 749 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 KINO60870 393 aaKnown RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 LUC7L3O95232 432 aaKnown RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 NAIF1Q69YI7 327 aaPredicted RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 TRIM42Q8IWZ5 723 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 NUB1Q9Y5A7 615 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 ERBINQ96RT1 1412 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 IPO5O00410 1097 aaKnown RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 CCDC192P0DO97 292 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 CABS1Q96KC9 395 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 USP33Q8TEY7 942 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 LUC7L2Q9Y383 392 aaKnown RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 SMARCA5O60264 1052 aaPredicted RBP7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 TUBB4AP04350 444 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 CCDC121Q6ZUS5 278 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 DUOX2Q9NRD8 1548 aa7.78□□□□□ -1.16
PDGFRA-201ENST00000257290 PSMC4P43686 418 aa7.77□□□□□ -1.16
PDGFRA-201ENST00000257290 POGZQ7Z3K3 1410 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 PPP1R12BO60237 982 aaPredicted RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 TBC1D31Q96DN5 1066 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 MPHOSPH6Q99547 160 aaKnown RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 VCX3BQ9H321 246 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 UNC45AQ9H3U1 944 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 VCX3AQ9NNX9 186 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 PPFIA2O75334 1257 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 U2AF1L5P0DN76 240 aaPredicted RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 ELF1P32519 619 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 U2AF1Q01081 240 aaKnown RBP eCLIP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 CCDC40Q4G0X9 1142 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 C16orf87Q6PH81 154 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 SRRTQ9BXP5 876 aaKnown RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 DENND4BO75064 1496 aaPredicted RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 FRMD3A2A2Y4 597 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 MXRA7P84157 204 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 WDR75Q8IWA0 830 aaKnown RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 CDK5RAP3Q96JB5 506 aa7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 G3BP2Q9UN86 482 aaKnown RBP7.77□□□□□ -1.17
PDGFRA-201ENST00000257290 LRRD1A4D1F6 860 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 GCFC2P16383 781 aaKnown RBP7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 PAX7P23759 505 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 BLVRAP53004 296 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 TSC1Q92574 1164 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 SGSM3Q96HU1 749 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 NAP1L3Q99457 506 aaPredicted RBP7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 TSC22D3Q99576 134 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 ASXL2Q76L83 1435 aa7.76□□□□□ -1.17
PDGFRA-201ENST00000257290 PEX14O75381 377 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms