RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SP5Q6BEB4 398 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TEX261Q6UWH6 196 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 LYPD8Q6UX82 237 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 RPS27LQ71UM5 84 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ATG16L2Q8NAA4 619 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 OR10A6Q8NH74 314 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 FRMD6Q96NE9 622 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF558Q96NG5 402 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MIEF1Q9NQG6 463 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TOR4AQ9NXH8 423 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SPG21Q9NZD8 308 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 U3KQ87 197 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 FABP3P05413 133 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CTSAP10619 480 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 AGFG1P52594 562 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PER3P56645 1201 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 WDR5P61964 334 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 AP1S1P61966 158 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 RUNX1T1Q06455 604 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM44Q2T9K0 475 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF284Q2VY69 593 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 FAM174BQ3ZCQ3 159 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SNAP47Q5SQN1 464 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 OTUD3Q5T2D3 398 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 FAM71E1Q6IPT2 247 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 GPR142Q7Z601 462 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM130Q8N3G9 435 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 LIX1Q8N485 282 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SLC47A1Q96FL8 570 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 LRFN5Q96NI6 719 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 OR2M2Q96R28 347 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 NELL2Q99435 816 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 GPR21Q99679 349 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 INPP5KQ9BT40 448 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SEMA6CQ9H3T2 930 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 POLMQ9NP87 494 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CATSPERZQ9NTU4 200 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TMLHEQ9NVH6 421 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 NUDT5Q9UKK9 219 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SNX6Q9UNH7 406 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TRBV6-7A0A0A0MS04 114 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 FOXE1O00358 373 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PCDH7O60245 1069 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SELENOFO60613 162 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ULK1O75385 1050 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 B3GAT3O94766 335 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MAPK1P28482 360 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 KIR3DL1P43629 444 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 GSTM5P46439 218 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 RGRP47804 291 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TUSC3Q13454 348 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 DNLZQ5SXM8 178 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF57Q68EA5 555 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ELP2Q6IA86 826 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PIM3Q86V86 326 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SNX29P2Q8IUI4 249 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CPXM2Q8N436 756 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 HSD17B8Q92506 261 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 RNF166Q96A37 237 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 RHBGQ9H310 441 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 BRF2Q9HAW0 419 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 UXTQ9UBK9 157 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MKL2Q9ULH7 1088 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF106Q9H2Y7 1883 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ANKRD36A6QL64 1941 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PLXNB2O15031 1838 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MTMR11A4FU01 709 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 STX7O15400 261 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 EPPINO95925 133 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 HNF1BP35680 557 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 GUCA1AP43080 201 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 DGKQP52824 942 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 BEX3Q00994 111 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PTPRCAPQ14761 206 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MICBQ29980 383 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 COL28A1Q2UY09 1125 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SLC36A2Q495M3 483 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PDZK1Q5T2W1 519 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CEACAM20Q6UY09 585 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 GDPD4Q6W3E5 623 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SLC43A2Q8N370 569 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CLIP4Q8N3C7 705 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 SNAPC3Q92966 411 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 DPYSL5Q9BPU6 564 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TPT1P8Q9HAU6 139 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ADAM30Q9UKF2 790 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TCFL5Q9UL49 500 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 EXOGQ9Y2C4 368 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PTPRDP23468 1912 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 A0A1W2PQ67 120 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 VNN2O95498 520 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 HMGN1P05114 100 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 ALOX12P18054 663 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 GAB1Q13480 694 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 RGNQ15493 299 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 SPHARQ15513 63 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 RNASE12Q5GAN4 147 aaKnown RBP5.09□□□□□ -1.6
SYNE1-220ENST00000471834 CCSAPQ6IQ19 270 aaPredicted RBP5.09□□□□□ -1.6
SYNE1-220ENST00000471834 RNF44Q7L0R7 432 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 CXorf40AQ8TE69 158 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms