RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KCTD3Q9Y597 815 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 A6NCN8 305 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 RNF222A6NCQ9 220 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MGAT4DA6NG13 374 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PAX1P15863 534 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 AOAHP28039 575 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 BDKRB1P46663 353 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 KCNQ1P51787 676 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MLC1Q15049 377 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SF3A2Q15428 464 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 GPR19Q15760 415 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MPEG1Q2M385 716 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SPANXN2Q5MJ10 180 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 FBXO46Q6PJ61 603 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 GOLGA7Q7Z5G4 137 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 NR2C2APQ86WQ0 139 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 LYPD6Q86Y78 171 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SLC30A8Q8IWU4 369 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PHACTR4Q8IZ21 702 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SLC5A8Q8N695 610 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 KDF1Q8NAX2 398 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR7D4Q8NG98 312 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR52N2Q8NGI0 321 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PPM1MQ96MI6 270 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 QRFPRQ96P65 431 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR51B5Q9H339 312 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 AGO3Q9H9G7 860 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 A8MU76 341 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 JUPP14923 745 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 AMD1P17707 334 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 NR4A1P22736 598 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MPZP25189 248 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PMELP40967 661 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MTPNP58546 118 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TIGD6Q17RP2 521 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF805Q5CZA5 627 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TYW3Q6IPR3 259 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 P3H2Q8IVL5 708 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF366Q8N895 744 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 CLIP3Q96DZ5 547 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PPP1R16AQ96I34 528 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 BCL2L14Q9BZR8 327 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR51E2Q9H255 320 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 EPHX3Q9H6B9 360 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 RNF122Q9H9V4 155 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PIPOXQ9P0Z9 390 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ADGRE2Q9UHX3 823 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 CORO2BQ9UQ03 480 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 E9PAM4 449 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SCAMP3O14828 347 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 NPC1O15118 1278 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 KIAA0513O60268 411 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 CYP17A1P05093 508 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 CKMP06732 381 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 CPEP16870 476 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 HSPA7P48741 367 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PGFP49763 221 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ST3GAL4Q11206 333 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 C2orf27AQ580R0 203 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PSAPL1Q6NUJ1 521 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TCTN3Q6NUS6 607 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TPGS1Q6ZTW0 290 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TRMT11Q7Z4G4 463 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 HSH2DQ96JZ2 352 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 UROC1Q96N76 676 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 RBP7Q96R05 134 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ATXN3LQ9H3M9 355 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TMPRSS11EQ9UL52 423 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MRPS23Q9Y3D9 190 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 GMPPBQ9Y5P6 360 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 BACE2Q9Y5Z0 518 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 FFAR1O14842 300 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TBX6O95947 436 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 HEXAP06865 529 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TGFBR1P36897 503 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 IL2P60568 153 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM64Q6YI46 380 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TTYH2Q9BSA4 534 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ADGRE3Q9BY15 652 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CREBZFQ9NS37 354 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PAQR5Q9NXK6 330 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 DUSP12Q9UNI6 340 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 NLRC5Q86WI3 1866 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MFSD2BA6NFX1 497 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 KDM4EB2RXH2 506 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ADM5C9JUS6 153 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CLDN5O00501 218 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 KHDRBS3O75525 346 aaKnown RBP5.09□□□□□ -1.59
SYNE1-220ENST00000471834 NMBP08949 121 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 CD22P20273 847 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 PSMB9P28065 219 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 OR1E1P30953 314 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 MAP2K4P45985 399 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 GIPRP48546 466 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 DCDC1P59894 354 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ERVK-21P61565 698 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 DUOXA1Q1HG43 343 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 ZFP69Q49AA0 526 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM236Q5W0B7 351 aa5.09□□□□□ -1.59
SYNE1-220ENST00000471834 FAM205BPQ63HN1 556 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms