RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GPC1P35052 558 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 VBP1P61758 197 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PTPRRQ15256 657 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PERM1Q5SV97 790 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 C10orf91Q5T1B1 145 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 MPP7Q5T2T1 576 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TCAIMQ8N3R3 496 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SPICQ8N5J4 248 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 DEFB123Q8N688 67 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NETO2Q8NC67 525 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 C19orf18Q8NEA5 215 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF680Q8NEM1 530 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PHYHIPQ92561 330 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NR4A3Q92570 626 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PPP1R14AQ96A00 147 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 VPS35Q96QK1 796 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 HBEGFQ99075 208 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RNF39Q9H2S5 420 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 MCM3APO60318 1980 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PLSCR5A0PG75 271 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 HS6ST1O60243 411 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 B3GALNT1O75752 331 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PNLIPRP1P54315 467 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TOMM20Q15388 145 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 FBXL22Q6P050 247 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KLHL17Q6TDP4 642 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF675Q8TD23 568 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SENP8Q96LD8 212 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 P2RY13Q9BPV8 354 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ABCG8Q9H221 673 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZDHHC6Q9H6R6 413 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NTMQ9P121 344 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KIF25Q9UIL4 384 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PTGDR2Q9Y5Y4 395 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SESN1Q9Y6P5 492 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KAT6AQ92794 2004 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 A0A1B0GVI7 797 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RHOCP08134 193 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 OPRD1P41143 372 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SOX9P48436 509 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CYP4F2P78329 520 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RAB40BQ12829 278 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ELAVL2Q12926 359 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 IL10RAQ13651 578 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CTXN3Q4LDR2 81 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 FNDC3BQ53EP0 1204 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 MS4A13Q5J8X5 152 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PRAMEF19Q5SWL8 479 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF517Q6ZMY9 492 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PRSS42Q7Z5A4 293 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF784Q8NCA9 323 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 UBASH3BQ8TF42 649 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 FYTTD1Q96QD9 318 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF426Q9BUY5 554 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SPNS1Q9H2V7 528 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RIBC2Q9H4K1 309 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 BARX1Q9HBU1 254 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SMURF1Q9HCE7 757 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KLHL1Q9NR64 748 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TLR8Q9NR97 1041 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TRPC4Q9UBN4 977 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PLOD3O60568 738 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PAGE1O75459 146 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ADRB1P08588 477 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TSPAN8P19075 237 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SMARCB1Q12824 385 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 GRB14Q14449 540 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ABRAXAS2Q15018 415 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM31Q5JXX7 168 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ELFN2Q5R3F8 820 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM91Q6ZNR0 172 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 KCTD20Q7Z5Y7 419 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MDGA1Q8NFP4 955 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ASB11Q8WXH4 323 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PMM1Q92871 262 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 FEVQ99581 238 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TBCDQ9BTW9 1192 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TRIM8Q9BZR9 551 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 HAO2Q9NYQ3 351 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SCN1AP35498 2009 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 RFXANKO14593 260 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MT-ND1P03886 318 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 NAT1P18440 290 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MAPK3P27361 379 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 PPM1AP35813 382 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 NDUFA9Q16795 377 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 UPP1Q16831 310 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ZSWIM7Q19AV6 140 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ISXQ2M1V0 245 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 SERINC5Q86VE9 423 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 DMBX1Q8NFW5 382 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR7G3Q8NG95 312 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR5H6Q8NGV6 325 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 OR5M11Q96RB7 305 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ZIC5Q96T25 663 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF717Q9BY31 904 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 POLR1EQ9GZS1 481 aaKnown RBP5.1□□□□□ -1.59
SYNE1-220ENST00000471834 MCUBQ9NWR8 336 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 VPS4AQ9UN37 437 aa5.1□□□□□ -1.59
SYNE1-220ENST00000471834 TMA7Q9Y2S6 64 aaKnown RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms