RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 IL32P24001 234 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 KCNJ5P48544 419 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SELENOWP63302 87 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 S100A12P80511 92 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 FCHO2Q0JRZ9 810 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ARMCX4Q5H9R4 360 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 TOR2AQ5JU69 321 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 BRAT1Q6PJG6 821 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RALGPS2Q86X27 583 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ZDHHC21Q8IVQ6 265 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 UPRTQ96BW1 309 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ZBED6CLQ96FA7 236 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MAP6Q96JE9 813 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DOHHQ9BU89 302 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 OSGEPL1Q9H4B0 414 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CRYL1Q9Y2S2 319 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PRG3Q9Y2Y8 225 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 A0A1W2PRQ8 180 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TSPAN11A1L157 253 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PRR19A6NJB7 356 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CEACAM18A8MTB9 384 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CBX4O00257 560 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TBX1O43435 398 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 GLP2RO95838 553 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TGM6O95932 706 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SLC9A3P48764 834 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TTPAP49638 278 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 GBX2P52951 348 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PGGT1BP53609 377 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 DGCR6Q14129 220 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 QSOX2Q6ZRP7 698 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 IKBIPQ70UQ0 350 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CHST9Q7L1S5 443 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RGMAQ96B86 450 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KCNA7Q96RP8 456 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 GAD1Q99259 594 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KATNB1Q9BVA0 655 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NDEL1Q9GZM8 345 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 C6orf62Q9GZU0 229 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 C11orf54Q9H0W9 315 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 THUMPD1Q9NXG2 353 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 EPHA6Q9UF33 1036 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 GPR182O15218 404 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SGTAO43765 313 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 LMO1P25800 156 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CRYBB1P53674 252 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 OR2B6P58173 313 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RRAS2P62070 204 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CDK5Q00535 292 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 LRRC32Q14392 662 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CSRP2Q16527 193 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SPIN4Q56A73 249 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 MARC1Q5VT66 337 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RD3Q7Z3Z2 195 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TMC8Q8IU68 726 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SYTL1Q8IYJ3 562 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NRSN1Q8IZ57 195 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 EID2Q8N6I1 236 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 OVCA2Q8WZ82 227 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SUSD3Q96L08 255 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 DCBLD2Q96PD2 775 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NUAK2Q9H093 628 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KLHL25Q9H0H3 589 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SACM1LQ9NTJ5 587 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 LYARQ9NX58 379 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 IMPAD1Q9NX62 359 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 GLTPQ9NZD2 209 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 COPZ2Q9P299 210 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 MYBPHLA2RUH7 354 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 F8W810 466 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 H3BRB1 525 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SLC28A1O00337 649 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 RNASET2O00584 256 aaKnown RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PCDH8O95206 1070 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NCK1P16333 377 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CCR1P32246 355 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SLC11A2P49281 568 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CRISP1P54107 249 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SCAND1P57086 179 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF91Q05481 1191 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SGCGQ13326 291 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 CEBPEQ15744 281 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 MAPKAPK3Q16644 382 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 DGKKQ5KSL6 1271 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 C1orf94Q6P1W5 598 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SPATA6LQ8N4H0 392 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 DNAJB14Q8TBM8 379 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TRAPPC12Q8WVT3 735 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ACOT12Q8WYK0 555 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 LMLNQ96KR4 655 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ACPTQ9BZG2 426 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SLC22A4Q9H015 551 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 NMUR1Q9HB89 426 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 TIGARQ9NQ88 270 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 PRDM9Q9NQV7 894 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ING1Q9UK53 422 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 KIAA1217Q5T5P2 1943 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SYT5O00445 386 aa5.11□□□□□ -1.59
SYNE1-220ENST00000471834 SNAI1O95863 264 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-220ENST00000471834 ERGP11308 486 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms