RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 POU1F1P28069 291 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PCSK1P29120 753 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 HNF4AP41235 474 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 EPHB3P54753 998 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF155Q12901 538 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CAMK2DQ13557 499 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 AKIRIN2Q53H80 203 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NHLRC3Q5JS37 347 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 FAM26DQ5JW98 314 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 UTS2BQ765I0 119 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LRRC8DQ7L1W4 858 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SAPCD2Q86UD0 394 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MON1AQ86VX9 555 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 STPG2Q8N412 459 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MIOSQ9NXC5 875 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SCML2Q9UQR0 700 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NOTOA8MTQ0 251 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 H0YC42 278 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 AP3D1O14617 1153 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PCDH17O14917 1159 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 YY2O15391 372 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CAPN1P07384 714 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CBSLP0DN79 551 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RBMS1P29558 406 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CBSP35520 551 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SCN1BQ07699 218 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CNTN1Q12860 1018 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 C6orf132Q5T0Z8 1188 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 HIST2H2AA3Q6FI13 130 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ALKBH2Q6NS38 261 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 GLT6D1Q7Z4J2 308 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CACUL1Q86Y37 369 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 GATAD2AQ86YP4 633 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SLC7A5P1Q8MH63 180 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 TTPALQ9BTX7 342 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ALX4Q9H161 411 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NPDC1Q9NQX5 325 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MRPL17Q9NRX2 175 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 USP36Q9P275 1121 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ENPP4Q9Y6X5 453 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 KLHL18O94889 574 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CCNB2O95067 398 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PDGFAP04085 211 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MPC1LP0DKB6 136 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MTHFRP42898 656 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MAN2A2P49641 1150 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RGS4P49798 205 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DMPKQ09013 629 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PUM1Q14671 1186 aaKnown RBP eCLIP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SIRPB2Q5JXA9 342 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ARMC12Q5T9G4 340 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DDI2Q5TDH0 399 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ARHGAP36Q6ZRI8 547 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 COMMD2Q86X83 199 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RAB43Q86YS6 212 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MIB1Q86YT6 1006 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 GALNT12Q8IXK2 581 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LINC00471Q8N535 108 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NATD1Q8N6N6 113 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 TTC29Q8NA56 475 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 OR52H1Q8NGJ2 320 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 OR52N1Q8NH53 320 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MRPL9Q9BYD2 267 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 IL20RAQ9UHF4 553 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NDRG2Q9UN36 371 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DYRK1BQ9Y463 629 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 A0A1W2PRB8 838 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SHISA3A0PJX4 238 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 GALR3O60755 368 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CST1P01037 141 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RPS14P62263 151 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 IL5RAQ01344 420 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RGS1Q08116 209 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DNASE1L3Q13609 305 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PTGR1Q14914 329 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 AP5B1Q2VPB7 878 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PLK5Q496M5 336 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LIN54Q6MZP7 749 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 KRT73Q86Y46 540 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 OR4L1Q8NH43 312 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 UTP15Q8TED0 518 aaKnown RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CHFRQ96EP1 664 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PCED1BQ96HM7 432 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 HDHD5Q9BXW7 423 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SPRTNQ9H040 489 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CERS4Q9HA82 394 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 BPIFA1Q9NP55 256 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MED17Q9NVC6 651 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CA5BQ9Y2D0 317 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 BTBD3Q9Y2F9 522 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 OARD1Q9Y530 152 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 GNG14A0A1W2PPG7 69 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 HEPACAM2A8MVW5 462 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 VSTM5A8MXK1 200 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 C10orf142B7Z368 130 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 TAPBPO15533 448 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 HCRTO43612 131 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RAF1P04049 648 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ASGR2P07307 311 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 AKR1A1P14550 325 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms