RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ABCG2Q9UNQ0 655 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 POFUT2Q9Y2G5 429 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SSX4O60224 188 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CCNKO75909 580 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 IGFBP5P24593 272 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 C21orf33P30042 268 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PLXNA3P51805 1871 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CREMQ03060 361 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SPANXN4Q5MJ08 99 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 NEK5Q6P3R8 708 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SLC38A6Q8IZM9 456 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 DEPDC4Q8N2C3 294 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 GPR151Q8TDV0 419 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM40Q8WWA1 233 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 HOXB13Q92826 284 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TUBGCP3Q96CW5 907 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PAWRQ96IZ0 340 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM43Q9BTV4 400 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 GSX2Q9BZM3 304 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 REXO4Q9GZR2 422 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 DDIT4Q9NX09 232 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PPIEQ9UNP9 301 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 GLTPD2A6NH11 291 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TTLL8A6PVC2 850 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 G3V2T6 193 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 MANBAO00462 879 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SLC10A3P09131 477 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ARAFP10398 606 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CTSEP14091 401 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PRPS1L1P21108 318 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TACR1P25103 407 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 RPS19P39019 145 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CLK1P49759 484 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF273Q14593 569 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TIGD5Q53EQ6 642 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ENTPD8Q5MY95 495 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PAGE2Q7Z2X7 111 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 NAXDQ8IW45 347 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CAMKVQ8NCB2 501 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 OR4A15Q8NGL6 344 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CD99L2Q8TCZ2 262 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 FAM120BQ96EK7 910 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 R3HDMLQ9H3Y0 253 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PDGFCQ9NRA1 345 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CYSLTR2Q9NS75 346 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 GLS2Q9UI32 602 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 UTS2RQ9UKP6 389 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 MEIKINA0A087WXM9 373 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 USP17L7P0C7H9 530 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CSRP1P21291 193 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ABATP80404 500 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF460Q14592 562 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TSNQ15631 228 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CTSL3PQ5NE16 218 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CACHD1Q5VU97 1274 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CXorf57Q6NSI4 855 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CCDC28AQ8IWP9 274 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 DNAJA4Q8WW22 397 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 DNAJB3Q8WWF6 145 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PRRX2Q99811 253 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ZYG11BQ9C0D3 744 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 LTB4R2Q9NPC1 389 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 RGS18Q9NS28 235 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TBC1D3BA6NDS4 549 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CTDSPLO15194 276 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 GSTZ1O43708 216 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 PRKYO43930 277 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ATG13O75143 517 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MT-CO1P00395 513 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 FMO4P31512 558 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 MTNR1BP49286 362 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 TP53BP2Q13625 1128 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF630Q2M218 657 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ATP6AP1LQ52LC2 224 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CD276Q5ZPR3 534 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DOK6Q6PKX4 331 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LRRC70Q7Z2Q7 622 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LUZP2Q86TE4 346 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NLGN4YQ8NFZ3 816 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CNIH3Q8TBE1 160 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CMTM7Q96FZ5 175 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SMARCD1Q96GM5 515 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SEPHS2Q99611 448 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 COPS4Q9BT78 406 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CENPOQ9BU64 300 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 SLC12A9Q9BXP2 914 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ZFYVE1Q9HBF4 777 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 TXNRD2Q9NNW7 524 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 EMC7Q9NPA0 242 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 ABCC13Q9NSE7 274 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RBM22Q9NW64 420 aaKnown RBP eCLIP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 DNMT3LQ9UJW3 386 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RPS6KA6Q9UK32 745 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LRRC14BA6NHZ5 514 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 LEUTXA8MZ59 168 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CDC7O00311 574 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 NOS1APO75052 506 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-220ENST00000471834 RECQL4O94761 1208 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 CRYZL1O95825 349 aa5.12□□□□□ -1.59
SYNE1-220ENST00000471834 IDSP22304 550 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms