RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 DCLRE1CQ96SD1 692 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 HIPK2Q9H2X6 1198 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ANKRD19PQ9H560 264 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SMURF2Q9HAU4 748 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 GALPQ9UBC7 116 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ENTPD4Q9Y227 616 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SLC9A8Q9Y2E8 581 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CDH10Q9Y6N8 788 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SH3BGRLO75368 114 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PTHP01270 115 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 APOA1P02647 267 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 HLA-GP17693 338 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CHRNA4P43681 627 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FPGSQ05932 587 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 EFEMP1Q12805 493 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 UGT8Q16880 541 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PAQR3Q6TCH7 311 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NETO1Q8TDF5 533 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 MYDGFQ969H8 173 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CELF6Q96J87 481 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 KRT84Q9NSB2 600 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PLEKHA6Q9Y2H5 1048 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 KLHL20Q9Y2M5 609 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 HS3ST4Q9Y661 456 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 OR2M5A3KFT3 312 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CENPXA8MT69 81 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 H3BM21 787 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ADAMDEC1O15204 470 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ATP6AP2O75787 350 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TPOP07202 933 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 DRD2P14416 443 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 THBS2P35442 1172 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 RABIFP47224 123 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SLC10A7Q0GE19 358 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF177Q13360 481 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NFATC2Q13469 925 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 BAK1Q16611 211 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 KHDRBS2Q5VWX1 349 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 OAFQ86UD1 273 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 STK40Q8N2I9 435 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FBXO39Q8N4B4 442 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CELF2-AS1Q8N7Q2 184 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM145Q8NBT3 493 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TOR1AIP2Q8NFQ8 470 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 HPS1Q92902 700 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FBXO32Q969P5 355 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 HYLS1Q96M11 299 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SERPINB11Q96P15 392 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NEDD4LQ96PU5 975 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 KCNS3Q9BQ31 491 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SLC30A2Q9BRI3 323 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NSUN3Q9H649 340 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PLEKHA1Q9HB21 404 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 MID1IP1Q9NPA3 183 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ACER3Q9NUN7 267 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 EGFL7Q9UHF1 273 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 DLGAP4Q9Y2H0 992 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SULT1A3P0DMM9 295 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SULT1A4P0DMN0 295 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 HAPLN1P10915 354 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 CPN1P15169 458 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 RPL17P18621 184 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ABCG1P45844 678 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 DHPSP49366 369 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 EVX1P49640 407 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SP140Q13342 867 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 FAM122CQ6P4D5 195 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PXKQ7Z7A4 578 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ZNF614Q8N883 585 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 POC5Q8NA72 575 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 OR52B6Q8NGF0 335 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SARGQ9BW04 601 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 EXOSC4Q9NPD3 245 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 RPRD1BQ9NQG5 326 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TMPRSS4Q9NRS4 437 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 A0A1W2PQ09 198 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 KRT87PA6NCN2 255 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 FAM25EA8MYX2 175 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 EFCAB9A8MZ26 197 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 H3BUI4 141 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 MITFO75030 526 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ITGA10O75578 1167 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PAPLNO95428 1278 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ADIGQ0VDE8 80 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 DYRK1AQ13627 763 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TAF1AQ15573 450 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 SPESP1Q6UW49 350 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 KIAA1324Q6UXG2 1013 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 GALNT10Q86SR1 603 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 FAM126BQ8IXS8 530 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 HS3ST5Q8IZT8 346 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 FAM98AQ8NCA5 519 aaKnown RBP5.13□□□□□ -1.59
SYNE1-220ENST00000471834 WDR20Q8TBZ3 569 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 PIH1D2Q8WWB5 315 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 TBATAQ96M53 351 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ALG9Q9H6U8 611 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 BRD9Q9H8M2 597 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 ABI3Q9P2A4 366 aa5.13□□□□□ -1.59
SYNE1-220ENST00000471834 RPS6KB2Q9UBS0 482 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms