RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MED26O95402 600 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 KRT75O95678 551 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 MT-CYBP00156 380 aaPredicted RBP5.15□□□□□ -1.59
SYNE1-220ENST00000471834 FEN1P39748 380 aaKnown RBP5.15□□□□□ -1.59
SYNE1-220ENST00000471834 PLK1P53350 603 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 BCL7AQ4VC05 210 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 CCDC58Q4VC31 144 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 ENPP6Q6UWR7 440 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 NANOGNBQ7Z5D8 188 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 ADGRG3Q86Y34 549 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 SPATA22Q8NHS9 363 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 TMEM163Q8TC26 289 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 RPL10LQ96L21 214 aaKnown RBP5.15□□□□□ -1.59
SYNE1-220ENST00000471834 MYOZ1Q9NP98 299 aaPredicted RBP5.15□□□□□ -1.59
SYNE1-220ENST00000471834 CHST12Q9NRB3 414 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 SCN3BQ9NY72 215 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 SLCO1C1Q9NYB5 712 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 KCNMB2Q9Y691 235 aa5.15□□□□□ -1.59
SYNE1-220ENST00000471834 SLC22A5O76082 557 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SLC2A3P11169 496 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 UGT2B7P16662 529 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TPH1P17752 444 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CAPZA2P47755 286 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 RPP38P78345 283 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 COX10Q12887 443 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 MPPE1Q53F39 396 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CLEC6AQ6EIG7 209 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NANOGP1Q8N7R0 232 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PHF21AQ96BD5 680 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PHF21BQ96EK2 531 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 THUMPD3Q9BV44 507 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CRISPLD1Q9H336 500 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PCDHB1Q9Y5F3 818 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TRDV1A0A1B0GX56 115 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PER2O15055 1255 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ICMTO60725 284 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FGF2P09038 288 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 LIMS3P0CW19 117 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 LIMS4P0CW20 117 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SDC1P18827 310 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 GADD45AP24522 165 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SOX6P35712 828 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 KIR2DL3P43628 341 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 DEFA1P59665 94 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 DEFA3P59666 94 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 RPS7P62081 194 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SLC14A1Q13336 389 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FNDC5Q8NAU1 212 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NPLOC4Q8TAT6 608 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FIG4Q92562 907 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CREB3L1Q96BA8 519 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PRR14Q9BWN1 585 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 BBS2Q9BXC9 721 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FAM83DQ9H4H8 585 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 KRCC1Q9NPI7 259 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TAS2R9Q9NYW1 312 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NDUFAF4Q9P032 175 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TBC1D14Q9P2M4 693 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 VPS51Q9UID3 782 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TIMM13Q9Y5L4 95 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 MYH9P35579 1960 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 BRCA1P38398 1863 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 A0A0U1RQF3 1178 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CCRL2O00421 344 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 NOBOXO60393 691 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 TPST1O60507 370 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 OTCP00480 354 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PCGF2P35227 344 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 AP1S2P56377 157 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 VAC14Q08AM6 782 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SMN1Q16637 294 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PRAMEF8Q5VWM4 474 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PRAMEF7Q5VXH5 474 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 OTOP3Q7RTS5 596 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ELMOD2Q8IZ81 293 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 FAM71CQ8NEG0 241 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SUN3Q8TAQ9 357 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ALG14Q96F25 216 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 MGLLQ99685 303 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 C7orf50Q9BRJ6 194 aaKnown RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PDGFDQ9GZP0 370 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-220ENST00000471834 HDHD2Q9H0R4 259 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 MAGEH1Q9H213 219 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 CRLS1Q9UJA2 301 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 A0A0G2JK05 382 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 C2orf81A6NN90 581 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 F5H5T6 163 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 RGS5O15539 181 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ASNA1O43681 348 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PI15O43692 258 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 LAG3P18627 525 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 SLC19A1P41440 591 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 RAB25P57735 213 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 POM121L1PQ3SYA9 428 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 GPR33Q49SQ1 333 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 AADACL4Q5VUY2 407 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 PIANPQ8IYJ0 282 aa5.14□□□□□ -1.59
SYNE1-220ENST00000471834 ADGRF3Q8IZF5 1079 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms