RNA–Protein interactions for RNA: YPL016W

SWI1, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI1, Length 3,945 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI1	YPL016W	VAS1	P07806	1104 aa	Known RBP	4.05	□□□□□ -1.76
SWI1	YPL016W	BRL1	P38770	471 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	SCS2	P40075	244 aa	Known RBP	4.05	□□□□□ -1.76
SWI1	YPL016W	YNL320W	P42840	284 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	SDH1	Q00711	640 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	RSR1	P13856	272 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	PHO3	P24031	467 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	GGA2	P38817	585 aa	Known RBP	4.05	□□□□□ -1.76
SWI1	YPL016W	ATH1	P48016	1211 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	YMR027W	Q04371	470 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	BUD7	Q08754	746 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	BUG1	Q12191	341 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	YOL098C	Q12496	1037 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	SWI6	P09959	803 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	ALG1	P16661	449 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	TEC1	P18412	486 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	TIF3	P34167	436 aa	Known RBP	4.05	□□□□□ -1.76
SWI1	YPL016W	BBC1	P47068	1157 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	MEC3	Q02574	474 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	MCP2	Q06567	569 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	NSE1	Q07913	336 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	CLP1	Q08685	445 aa	Predicted RBP	4.05	□□□□□ -1.76
SWI1	YPL016W	PCL8	Q08966	492 aa		4.05	□□□□□ -1.76
SWI1	YPL016W	CDC31	P06704	161 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	HMG1	P12683	1054 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	GCG1	P32656	232 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	MNN2	P38069	597 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	RPG1	P38249	964 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	YNR029C	P53729	429 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	KTR5	P53966	522 aa	Predicted RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	MFM1	Q02783	413 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	RSC2	Q06488	889 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	RPN8	Q08723	338 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	SBA1	P28707	216 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	SEC8	P32855	1065 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	APL2	P36000	726 aa	Predicted RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	SWC5	P38326	303 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	DYS1	P38791	387 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	UBP5	P39944	805 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	GCD10	P41814	478 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	MET12	P46151	657 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	GTR1	Q00582	310 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	YPR204W	Q08995	1032 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	ENO1	P00924	437 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	ILS1	P09436	1072 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	HXT3	P32466	567 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	ABZ1	P37254	787 aa	Predicted RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	EDC3	P39998	551 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	IRR1	P40541	1150 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	RNR4	P49723	345 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	MEH1	Q02205	184 aa		4.04	□□□□□ -1.76
SWI1	YPL016W	EMI2	Q04409	500 aa	Known RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
SWI1	YPL016W	FAP7	Q12055	197 aa	Predicted RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	SNU66	Q12420	587 aa	Predicted RBP	4.04	□□□□□ -1.76
SWI1	YPL016W	MSH2	P25847	964 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	SMY2	P32909	740 aa	Known RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	ATG19	P35193	415 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	ZDS1	P50111	915 aa	Known RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	PIB2	P53191	635 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	MPH3	P0CE00	602 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	SEC15	P22224	910 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	MRPL25	P23369	157 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	LOS1	P33418	1100 aa	Predicted RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	SET2	P46995	733 aa	Known RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	SNX4	P47057	423 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	YNL058C	P53947	316 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	PMT7	Q06644	662 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	MPC54	Q08550	464 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	CCH1	P50077	2039 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	CPA2	P03965	1118 aa	Known RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	LEU2	P04173	364 aa	Predicted RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	BAS1	P22035	811 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	GSY2	P27472	705 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	GIP1	P38229	639 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	CCT5	P40413	562 aa	Known RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	HAM1	P47119	197 aa	Known RBP	4.03	□□□□□ -1.76
SWI1	YPL016W	YNL108C	P53929	270 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	SFB2	P53953	876 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	DML1	Q03652	475 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	GLE1	Q12315	538 aa		4.03	□□□□□ -1.76
SWI1	YPL016W	PRT1	P06103	763 aa	Known RBP	4.02	□□□□□ -1.77
SWI1	YPL016W	RAD1	P06777	1100 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	GYP6	P32806	458 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	YSW1	P38280	609 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	YBR287W	P38355	427 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	VMA22	P38784	181 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	TDA11	P38854	504 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	NMD3	P38861	518 aa	Known RBP	4.02	□□□□□ -1.77
SWI1	YPL016W	MDJ2	P42834	146 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	HXT10	P43581	546 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	CNN1	P43618	361 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	UBA2	P52488	636 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	YKR005C	Q02203	525 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	MGR3	Q04472	501 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	YDR278C	Q05612	105 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	SIL1	Q08199	421 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	RTT10	Q08924	1013 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	AI2	P03876	854 aa		4.02	□□□□□ -1.77
SWI1	YPL016W	BIK1	P11709	440 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 40.4 ms