RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C UME1Q03010 460 aa12.1□□□□□ -0.47
SPT8YLR055C CEX1Q12453 761 aa12.1□□□□□ -0.47
SPT8YLR055C TIF6Q12522 245 aaKnown RBP12.1□□□□□ -0.47
SPT8YLR055C RAD1P06777 1100 aa12.09□□□□□ -0.47
SPT8YLR055C VFA1P40080 203 aa12.09□□□□□ -0.47
SPT8YLR055C NET1P47035 1189 aa12.09□□□□□ -0.47
SPT8YLR055C VTC3Q02725 835 aa12.09□□□□□ -0.47
SPT8YLR055C NEW1Q08972 1196 aaKnown RBP12.09□□□□□ -0.47
SPT8YLR055C NUR1Q12066 484 aa12.09□□□□□ -0.47
SPT8YLR055C ALG1P16661 449 aa12.09□□□□□ -0.47
SPT8YLR055C SRP54P20424 541 aaKnown RBP12.09□□□□□ -0.47
SPT8YLR055C RSC30P38781 883 aa12.09□□□□□ -0.47
SPT8YLR055C RTC4P53850 401 aa12.09□□□□□ -0.47
SPT8YLR055C NAF1P53919 492 aaKnown RBP12.09□□□□□ -0.47
SPT8YLR055C NGL3Q03210 505 aa12.09□□□□□ -0.47
SPT8YLR055C NOP6Q07623 225 aaKnown RBP12.09□□□□□ -0.47
SPT8YLR055C RMP1Q12530 201 aa12.09□□□□□ -0.47
SPT8YLR055C PAP1P29468 568 aaKnown RBP12.08□□□□□ -0.48
SPT8YLR055C DUS1P53759 423 aaKnown RBP12.08□□□□□ -0.48
SPT8YLR055C MDM1Q01846 1127 aa12.08□□□□□ -0.48
SPT8YLR055C MYO1P08964 1928 aa12.08□□□□□ -0.48
SPT8YLR055C ASH1P34233 588 aa12.07□□□□□ -0.48
SPT8YLR055C PTC4P38089 393 aa12.07□□□□□ -0.48
SPT8YLR055C YAP5P40574 245 aa12.07□□□□□ -0.48
SPT8YLR055C DAK2P43550 591 aa12.07□□□□□ -0.48
SPT8YLR055C YJR079WP47126 109 aa12.07□□□□□ -0.48
SPT8YLR055C YNL035CP53962 389 aaKnown RBP12.07□□□□□ -0.48
SPT8YLR055C TIP41Q12199 356 aa12.07□□□□□ -0.48
SPT8YLR055C MET6P05694 767 aaKnown RBP12.07□□□□□ -0.48
SPT8YLR055C CKI1P20485 582 aa12.07□□□□□ -0.48
SPT8YLR055C PER1P25625 357 aa12.07□□□□□ -0.48
SPT8YLR055C SUE1Q06524 206 aa12.07□□□□□ -0.48
SPT8YLR055C UTP4Q06679 776 aaKnown RBP12.07□□□□□ -0.48
SPT8YLR055C UBX5Q06682 500 aa12.07□□□□□ -0.48
SPT8YLR055C YLR001CQ07895 862 aa12.07□□□□□ -0.48
SPT8YLR055C DSE3Q08729 430 aa12.07□□□□□ -0.48
SPT8YLR055C CFT2Q12102 859 aaPredicted RBP12.07□□□□□ -0.48
SPT8YLR055C CDC8P00572 216 aa12.06□□□□□ -0.48
SPT8YLR055C TOM70P07213 617 aaKnown RBP12.06□□□□□ -0.48
SPT8YLR055C IXR1P33417 597 aa12.06□□□□□ -0.48
SPT8YLR055C MOT2P34909 587 aaKnown RBP12.06□□□□□ -0.48
SPT8YLR055C RPC25P35718 212 aa12.06□□□□□ -0.48
SPT8YLR055C LSB1P53281 241 aa12.06□□□□□ -0.48
SPT8YLR055C YDR341CQ05506 607 aaKnown RBP12.06□□□□□ -0.48
SPT8YLR055C CWC2Q12046 339 aaPredicted RBP12.06□□□□□ -0.48
SPT8YLR055C CIT1P00890 479 aa12.05□□□□□ -0.48
SPT8YLR055C PSE1P32337 1089 aaKnown RBP12.05□□□□□ -0.48
SPT8YLR055C TOM71P38825 639 aaKnown RBP12.05□□□□□ -0.48
SPT8YLR055C GIS4Q04233 774 aa12.05□□□□□ -0.48
SPT8YLR055C YOL075CQ08234 1294 aa12.05□□□□□ -0.48
SPT8YLR055C RAD18P10862 487 aa12.04□□□□□ -0.48
SPT8YLR055C PDC6P26263 563 aaKnown RBP12.04□□□□□ -0.48
SPT8YLR055C SPR3P41901 512 aa12.04□□□□□ -0.48
SPT8YLR055C SOV1Q04748 898 aa12.04□□□□□ -0.48
SPT8YLR055C YAP7Q08182 245 aa12.04□□□□□ -0.48
SPT8YLR055C PPR1P07272 904 aaPredicted RBP12.04□□□□□ -0.48
SPT8YLR055C PHO88P38264 188 aaPredicted RBP12.04□□□□□ -0.48
SPT8YLR055C RPS0BP46654 252 aaKnown RBP12.04□□□□□ -0.48
SPT8YLR055C SEC20P28791 383 aa12.03□□□□□ -0.48
SPT8YLR055C ERG7P38604 731 aa12.03□□□□□ -0.48
SPT8YLR055C IES1P43579 692 aa12.03□□□□□ -0.48
SPT8YLR055C YGL138CP53122 345 aa12.03□□□□□ -0.48
SPT8YLR055C SDH5Q08230 162 aa12.03□□□□□ -0.48
SPT8YLR055C STI1P15705 589 aaKnown RBP RIP-Chip data12.02□□□□□ -0.48not detected
SPT8YLR055C VIP1Q06685 1146 aaKnown RBP12.02□□□□□ -0.48
SPT8YLR055C VMA2P16140 517 aaKnown RBP12.02□□□□□ -0.49
SPT8YLR055C RPL8AP17076 256 aaKnown RBP12.02□□□□□ -0.49
SPT8YLR055C DAL7P21826 554 aa12.02□□□□□ -0.49
SPT8YLR055C CDC60P26637 1090 aaKnown RBP12.02□□□□□ -0.49
SPT8YLR055C TRS85P46944 698 aa12.02□□□□□ -0.49
SPT8YLR055C POB3Q04636 552 aaKnown RBP12.02□□□□□ -0.49
SPT8YLR055C STE23Q06010 1027 aa12.02□□□□□ -0.49
SPT8YLR055C SAM1P10659 382 aaKnown RBP12.01□□□□□ -0.49
SPT8YLR055C YMR124WP39523 943 aaKnown RBP12.01□□□□□ -0.49
SPT8YLR055C ASE1P50275 885 aa12.01□□□□□ -0.49
SPT8YLR055C SRF1Q12516 437 aa12.01□□□□□ -0.49
SPT8YLR055C MAD1P40957 749 aa12□□□□□ -0.49
SPT8YLR055C ALD6P54115 500 aaKnown RBP12□□□□□ -0.49
SPT8YLR055C SPO75Q07798 868 aa12□□□□□ -0.49
SPT8YLR055C HXT1P32465 570 aa12□□□□□ -0.49
SPT8YLR055C RIM101P33400 625 aa12□□□□□ -0.49
SPT8YLR055C NDT80P38830 627 aa12□□□□□ -0.49
SPT8YLR055C VTC2P43585 828 aa12□□□□□ -0.49
SPT8YLR055C UBA2P52488 636 aa12□□□□□ -0.49
SPT8YLR055C TRS120Q04183 1289 aa12□□□□□ -0.49
SPT8YLR055C OPY2Q06810 360 aa12□□□□□ -0.49
SPT8YLR055C TUF1P02992 437 aaKnown RBP11.99□□□□□ -0.49
SPT8YLR055C PRE10P21242 288 aaKnown RBP RIP-Chip data11.99□□□□□ -0.49not detected
SPT8YLR055C PWP2P25635 923 aaKnown RBP11.99□□□□□ -0.49
SPT8YLR055C SWH1P35845 1188 aa11.99□□□□□ -0.49
SPT8YLR055C YKR018CP36114 725 aa11.99□□□□□ -0.49
SPT8YLR055C STT3P39007 718 aaKnown RBP11.99□□□□□ -0.49
SPT8YLR055C CCT3P39077 534 aaKnown RBP11.99□□□□□ -0.49
SPT8YLR055C FMS1P50264 508 aa11.99□□□□□ -0.49
SPT8YLR055C YMR114CQ04471 368 aaKnown RBP11.99□□□□□ -0.49
SPT8YLR055C TMA64Q04600 565 aaKnown RBP11.99□□□□□ -0.49
SPT8YLR055C YDR338CQ05497 695 aa11.99□□□□□ -0.49
SPT8YLR055C PRP16P15938 1071 aaPredicted RBP11.98□□□□□ -0.49
SPT8YLR055C OM45P16547 393 aa11.98□□□□□ -0.49
SPT8YLR055C TGL1P34163 548 aa11.98□□□□□ -0.49
Retrieved 100 of 5,963 RNA–protein pairs in 111.4 ms