RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W UFD2P54860 961 aa4.82□□□□□ -1.64
SSL1YLR005W RSC4Q02206 625 aa4.82□□□□□ -1.64
SSL1YLR005W PRP42Q03776 544 aaKnown RBP4.82□□□□□ -1.64
SSL1YLR005W RBA50Q04418 439 aa4.82□□□□□ -1.64
SSL1YLR005W PUF3Q07807 879 aaKnown RBP RIP-Chip data4.82□□□□□ -1.64not detected
SSL1YLR005W TAO3P40468 2376 aa4.82□□□□□ -1.64
SSL1YLR005W SUP35P05453 685 aaKnown RBP4.81□□□□□ -1.64
SSL1YLR005W CHS2P14180 963 aa4.81□□□□□ -1.64
SSL1YLR005W CDC3P32457 520 aaKnown RBP4.81□□□□□ -1.64
SSL1YLR005W ECM2P38241 364 aaKnown RBP4.81□□□□□ -1.64
SSL1YLR005W ERP5P38819 212 aa4.81□□□□□ -1.64
SSL1YLR005W NCE103P53615 221 aa4.81□□□□□ -1.64
SSL1YLR005W TRS120Q04183 1289 aa4.81□□□□□ -1.64
SSL1YLR005W FLO11P08640 1367 aa4.81□□□□□ -1.64
SSL1YLR005W CBP1P07252 654 aa4.8□□□□□ -1.64
SSL1YLR005W NUP133P36161 1157 aa4.8□□□□□ -1.64
SSL1YLR005W RPT4P53549 437 aaKnown RBP4.8□□□□□ -1.64
SSL1YLR005W YNL011CP53980 444 aa4.8□□□□□ -1.64
SSL1YLR005W YDR306CQ06640 478 aa4.8□□□□□ -1.64
SSL1YLR005W MED7Q08278 222 aa4.8□□□□□ -1.64
SSL1YLR005W MNL2Q12205 849 aa4.8□□□□□ -1.64
SSL1YLR005W YBL113CQ7M4S9 792 aa4.8□□□□□ -1.64
SSL1YLR005W VPS13Q07878 3144 aa4.8□□□□□ -1.64
SSL1YLR005W GEF1P37020 779 aa4.79□□□□□ -1.64
SSL1YLR005W SPL2P38839 148 aa4.79□□□□□ -1.64
SSL1YLR005W NUG1P40010 520 aaKnown RBP4.79□□□□□ -1.64
SSL1YLR005W MDJ2P42834 146 aa4.79□□□□□ -1.64
SSL1YLR005W FCP1Q03254 732 aa4.79□□□□□ -1.64
SSL1YLR005W THI3Q07471 609 aa4.79□□□□□ -1.64
SSL1YLR005W MRP7P12687 371 aa4.78□□□□□ -1.64
SSL1YLR005W MGM1P32266 881 aa4.78□□□□□ -1.64
SSL1YLR005W NIT1P40447 199 aa4.78□□□□□ -1.64
SSL1YLR005W GSM1P42950 618 aa4.78□□□□□ -1.64
SSL1YLR005W THI22Q06490 572 aa4.78□□□□□ -1.64
SSL1YLR005W ADR1P07248 1323 aa4.78□□□□□ -1.64
SSL1YLR005W NPR1P22211 790 aa4.78□□□□□ -1.64
SSL1YLR005W LIP5P32875 414 aa4.78□□□□□ -1.64
SSL1YLR005W YHL008CP38750 627 aa4.78□□□□□ -1.64
SSL1YLR005W PNT1P38969 423 aa4.78□□□□□ -1.64
SSL1YLR005W SRT1Q03175 343 aa4.78□□□□□ -1.64
SSL1YLR005W BSC2Q05611 235 aa4.78□□□□□ -1.64
SSL1YLR005W RTT109Q07794 436 aa4.78□□□□□ -1.64
SSL1YLR005W CMR1Q12510 522 aaKnown RBP4.78□□□□□ -1.64
SSL1YLR005W FRT1Q99332 602 aa4.78□□□□□ -1.64
SSL1YLR005W YPR117WQ06116 2489 aa4.77□□□□□ -1.65
SSL1YLR005W RPS7AP26786 190 aaKnown RBP4.77□□□□□ -1.65
SSL1YLR005W RIM11P38615 370 aa4.77□□□□□ -1.65
SSL1YLR005W FAR11P53917 953 aa4.77□□□□□ -1.65
SSL1YLR005W IRC4Q03036 179 aa4.77□□□□□ -1.65
SSL1YLR005W YLR225CQ05948 407 aaKnown RBP4.77□□□□□ -1.65
SSL1YLR005W SGD1Q06132 899 aa4.77□□□□□ -1.65
SSL1YLR005W GIC2Q06648 383 aa4.77□□□□□ -1.65
SSL1YLR005W GPI13Q07830 1017 aa4.77□□□□□ -1.65
SSL1YLR005W WRS1Q12109 432 aaKnown RBP4.77□□□□□ -1.65
SSL1YLR005W CYC7P00045 113 aa4.76□□□□□ -1.65
SSL1YLR005W MTC3P53077 123 aa4.76□□□□□ -1.65
SSL1YLR005W HEF3P53978 1044 aaKnown RBP4.76□□□□□ -1.65
SSL1YLR005W CDC55Q00362 526 aa4.76□□□□□ -1.65
SSL1YLR005W GIN4Q12263 1142 aa4.76□□□□□ -1.65
SSL1YLR005W FLP1P03870 423 aa4.75□□□□□ -1.65
SSL1YLR005W LCB1P25045 558 aaKnown RBP4.75□□□□□ -1.65
SSL1YLR005W GPT2P36148 743 aa4.75□□□□□ -1.65
SSL1YLR005W SPO74P45819 413 aa4.75□□□□□ -1.65
SSL1YLR005W MPP10P47083 593 aaKnown RBP4.75□□□□□ -1.65
SSL1YLR005W NUT2Q06213 157 aa4.75□□□□□ -1.65
SSL1YLR005W SNU66Q12420 587 aaPredicted RBP4.75□□□□□ -1.65
SSL1YLR005W HTS1P07263 546 aaKnown RBP4.74□□□□□ -1.65
SSL1YLR005W PAH1P32567 862 aa4.74□□□□□ -1.65
SSL1YLR005W PUB1P32588 453 aaKnown RBP RIP-Chip data4.74□□□□□ -1.65not detected
SSL1YLR005W PAM1P37304 830 aaKnown RBP4.74□□□□□ -1.65
SSL1YLR005W MAL31P38156 614 aa4.74□□□□□ -1.65
SSL1YLR005W MON1P53129 644 aa4.74□□□□□ -1.65
SSL1YLR005W TOS4Q06266 489 aa4.74□□□□□ -1.65
SSL1YLR005W BRE4Q07660 1125 aa4.74□□□□□ -1.65
SSL1YLR005W NOP8Q08287 484 aaPredicted RBP4.74□□□□□ -1.65
SSL1YLR005W ALG6Q12001 544 aaKnown RBP4.74□□□□□ -1.65
SSL1YLR005W YOR223WQ12015 292 aa4.74□□□□□ -1.65
SSL1YLR005W FLO1P32768 1537 aa4.74□□□□□ -1.65
SSL1YLR005W MSB1P21339 1137 aaKnown RBP4.73□□□□□ -1.65
SSL1YLR005W UBP12P39538 1254 aa4.73□□□□□ -1.65
SSL1YLR005W YFH7P43591 353 aa4.73□□□□□ -1.65
SSL1YLR005W NET1P47035 1189 aa4.73□□□□□ -1.65
SSL1YLR005W NUT1P53114 1132 aa4.73□□□□□ -1.65
SSL1YLR005W DOT1Q04089 582 aaKnown RBP4.73□□□□□ -1.65
SSL1YLR005W YDL144CQ07589 356 aa4.73□□□□□ -1.65
SSL1YLR005W RAD53P22216 821 aa4.72□□□□□ -1.65
SSL1YLR005W SDH1Q00711 640 aa4.72□□□□□ -1.65
SSL1YLR005W MSH6Q03834 1242 aa4.72□□□□□ -1.65
SSL1YLR005W PPM2Q08282 695 aa4.72□□□□□ -1.65
SSL1YLR005W TY3A-GQ12173 290 aa4.72□□□□□ -1.65
SSL1YLR005W TY3A-IQ99219 290 aa4.72□□□□□ -1.65
SSL1YLR005W PIF1P07271 859 aa4.71□□□□□ -1.66
SSL1YLR005W FBP1P09201 348 aa4.71□□□□□ -1.66
SSL1YLR005W PFK2P16862 959 aaKnown RBP RIP-Chip data4.71□□□□□ -1.66not detected
SSL1YLR005W MCM5P29496 775 aaKnown RBP4.71□□□□□ -1.66
SSL1YLR005W WHI3P34761 661 aaKnown RBP4.71□□□□□ -1.66
SSL1YLR005W ERG7P38604 731 aa4.71□□□□□ -1.66
SSL1YLR005W PSF2P40359 213 aa4.71□□□□□ -1.66
SSL1YLR005W MSH4P40965 878 aaPredicted RBP4.71□□□□□ -1.66
SSL1YLR005W AVT1P47082 602 aa4.71□□□□□ -1.66
Retrieved 100 of 5,963 RNA–protein pairs in 37.8 ms