RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP40	YKR092C	COQ4	O13525	335 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	RPL11A	P0C0W9	174 aa	Known RBP	4.89	□□□□□ -1.63
SRP40	YKR092C	SAM35	P14693	329 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	RAD4	P14736	754 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	SRO9	P25567	434 aa	Known RBP	4.89	□□□□□ -1.63
SRP40	YKR092C	SRP40	P32583	406 aa	Predicted RBP	4.89	□□□□□ -1.63
SRP40	YKR092C	STE5	P32917	917 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	MDL2	P33311	773 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	PBY1	P38254	753 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	TAT2	P38967	592 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	PNT1	P38969	423 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	PEX7	P39108	375 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	MXR1	P40029	184 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	SPO75	Q07798	868 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	RPL11B	Q3E757	174 aa	Predicted RBP	4.89	□□□□□ -1.63
SRP40	YKR092C	YTA7	P40340	1379 aa		4.89	□□□□□ -1.63
SRP40	YKR092C	RNA1	P11745	407 aa	Known RBP	4.88	□□□□□ -1.63
SRP40	YKR092C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
SRP40	YKR092C	NSE3	Q05541	303 aa		4.88	□□□□□ -1.63
SRP40	YKR092C	RCL1	Q08096	367 aa	Predicted RBP	4.88	□□□□□ -1.63
SRP40	YKR092C	NBA1	Q08229	501 aa	Known RBP	4.88	□□□□□ -1.63
SRP40	YKR092C	CDC53	Q12018	815 aa	Known RBP	4.88	□□□□□ -1.63
SRP40	YKR092C	UFD4	P33202	1483 aa		4.88	□□□□□ -1.63
SRP40	YKR092C	SWR1	Q05471	1514 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
SRP40	YKR092C	SNF5	P18480	905 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	DBP2	P24783	546 aa	Known RBP	4.87	□□□□□ -1.63
SRP40	YKR092C	PRO1	P32264	428 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	BAP2	P38084	609 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	CCZ1	P38273	704 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	PTC7	P38797	343 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	GEM1	P39722	662 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	SIP5	P40210	489 aa	Known RBP	4.87	□□□□□ -1.63
SRP40	YKR092C	IOC3	P43596	787 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	OSW7	P43611	510 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	TIM54	P47045	478 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	HUL5	P53119	910 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
SRP40	YKR092C	DFG16	Q99234	619 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	POL1	P13382	1468 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	STU1	P38198	1513 aa		4.87	□□□□□ -1.63
SRP40	YKR092C	MYO2	P19524	1574 aa	Known RBP	4.87	□□□□□ -1.63
SRP40	YKR092C	ADP1	P25371	1049 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	PIK1	P39104	1066 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	UBP5	P39944	805 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	GTS1	P40956	396 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	YFL054C	P43549	646 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	ECL1	P48235	211 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	SSY1	Q03770	852 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	RSC58	Q07979	502 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	RSB1	Q08417	382 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	OSH2	Q12451	1283 aa		4.86	□□□□□ -1.63
SRP40	YKR092C	YKL091C	P33324	310 aa	Known RBP	4.85	□□□□□ -1.63
SRP40	YKR092C	UGA2	P38067	497 aa		4.85	□□□□□ -1.63
SRP40	YKR092C	FUN12	P39730	1002 aa	Known RBP	4.85	□□□□□ -1.63
SRP40	YKR092C	EAF1	Q06337	982 aa		4.85	□□□□□ -1.63
SRP40	YKR092C	BDF2	Q07442	638 aa		4.85	□□□□□ -1.63
SRP40	YKR092C	FMP25	Q08023	583 aa		4.85	□□□□□ -1.63
SRP40	YKR092C	ACM1	Q08981	209 aa		4.85	□□□□□ -1.63
SRP40	YKR092C	YOR131C	Q12486	218 aa		4.85	□□□□□ -1.63
SRP40	YKR092C	MON2	P48563	1636 aa	Predicted RBP	4.84	□□□□□ -1.63
SRP40	YKR092C	IKI3	Q06706	1349 aa	Known RBP	4.84	□□□□□ -1.63
SRP40	YKR092C	RPL8B	P29453	256 aa	Known RBP	4.84	□□□□□ -1.63
SRP40	YKR092C	AIM26	P32858	118 aa		4.84	□□□□□ -1.63
SRP40	YKR092C	HSP78	P33416	811 aa		4.84	□□□□□ -1.63
SRP40	YKR092C	PFD1	P46988	109 aa		4.84	□□□□□ -1.63
SRP40	YKR092C	YGR125W	P53273	1036 aa		4.84	□□□□□ -1.63
SRP40	YKR092C	TRM732	Q03496	1420 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	QCR6	P00127	147 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	THS1	P04801	734 aa	Known RBP	4.83	□□□□□ -1.64
SRP40	YKR092C	PRP9	P19736	530 aa	Known RBP	4.83	□□□□□ -1.64
SRP40	YKR092C	HSP60	P19882	572 aa	Known RBP	4.83	□□□□□ -1.64
SRP40	YKR092C	ARE1	P25628	610 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	SLA2	P33338	968 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	ALR2	P43553	858 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	YDR306C	Q06640	478 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	FLC1	Q08967	793 aa		4.83	□□□□□ -1.64
SRP40	YKR092C	GAS1	P22146	559 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	ENP1	P38333	483 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	RIX1	P38883	763 aa	Predicted RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	SAH1	P39954	449 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	NIT1	P40447	199 aa		4.82	□□□□□ -1.64
SRP40	YKR092C	FOL2	P51601	243 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	ERP6	P53198	216 aa		4.82	□□□□□ -1.64
SRP40	YKR092C	UTP8	P53276	713 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	SRP1	Q02821	542 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	DUS3	Q06053	668 aa	Known RBP	4.82	□□□□□ -1.64
SRP40	YKR092C	ESP1	Q03018	1630 aa		4.82	□□□□□ -1.64
SRP40	YKR092C	SPP41	P38904	1435 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	SPS1	P08458	490 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	AAR2	P32357	355 aa	Predicted RBP	4.81	□□□□□ -1.64
SRP40	YKR092C	BRN1	P38170	754 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	YHR020W	P38708	688 aa	Known RBP	4.81	□□□□□ -1.64
SRP40	YKR092C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
SRP40	YKR092C	TPO2	P53283	614 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	RTS3	P53289	263 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	DOS2	P54858	310 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	RPN4	Q03465	531 aa		4.81	□□□□□ -1.64
SRP40	YKR092C	FPR4	Q06205	392 aa	Predicted RBP	4.81	□□□□□ -1.64
SRP40	YKR092C	UBX5	Q06682	500 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 87.6 ms