RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	MAL11	P53048	616 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	CWC24	P53769	259 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	AOS1	Q06624	347 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	RSC58	Q07979	502 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	DNF1	P32660	1571 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	CAN1	P04817	590 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	YER152C	P10356	443 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	DBP2	P24783	546 aa	Known RBP	3.04	□□□□□ -1.92
SNU114	YKL173W	SEG2	P34250	1132 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	YHL012W	P38709	493 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	HOS3	Q02959	697 aa	Known RBP	3.04	□□□□□ -1.92
SNU114	YKL173W	TDA5	Q06417	326 aa	Known RBP	3.04	□□□□□ -1.92
SNU114	YKL173W	MRL1	Q06815	381 aa		3.04	□□□□□ -1.92
SNU114	YKL173W	PHO8	P11491	566 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	YBR184W	P38299	523 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	YFL054C	P43549	646 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	TIM54	P47045	478 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	ECL1	P48235	211 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	YNR063W	P53749	607 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	ATG13	Q06628	738 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	RIB2	Q12362	591 aa	Known RBP	3.03	□□□□□ -1.92
SNU114	YKL173W	TRP2	P00899	507 aa	Known RBP	3.03	□□□□□ -1.92
SNU114	YKL173W	LIP5	P32875	414 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	YNR029C	P53729	429 aa	Known RBP	3.03	□□□□□ -1.92
SNU114	YKL173W	TMA46	Q12000	345 aa	Known RBP	3.03	□□□□□ -1.92
SNU114	YKL173W	PRO1	P32264	428 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	PTC7	P38797	343 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	CHZ1	P40019	153 aa	Predicted RBP	3.03	□□□□□ -1.92
SNU114	YKL173W	YEN1	P40028	759 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	NIT1	P40447	199 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	YOR131C	Q12486	218 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	YGR161W-C	Q3E744	92 aa		3.03	□□□□□ -1.92
SNU114	YKL173W	RPL8A	P17076	256 aa	Known RBP	3.02	□□□□□ -1.93
SNU114	YKL173W	SRM1	P21827	482 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	RPL8B	P29453	256 aa	Known RBP	3.02	□□□□□ -1.93
SNU114	YKL173W	PIK1	P39104	1066 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	SIP5	P40210	489 aa	Known RBP	3.02	□□□□□ -1.93
SNU114	YKL173W	TPM2	P40414	161 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	MTC3	P53077	123 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	NAN1	Q02931	896 aa	Known RBP	3.02	□□□□□ -1.93
SNU114	YKL173W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
SNU114	YKL173W	BUD21	Q08492	214 aa	Predicted RBP	3.02	□□□□□ -1.93
SNU114	YKL173W	BET3	P36149	193 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	PNT1	P38969	423 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	GPB2	P39717	880 aa		3.02	□□□□□ -1.93
SNU114	YKL173W	NOP14	Q99207	810 aa	Known RBP	3.02	□□□□□ -1.93
SNU114	YKL173W	MLS1	P30952	554 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	AVT1	P47082	602 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	RTA1	P53047	317 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	FOL1	P53848	824 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	TAF8	Q03750	510 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	GNT1	Q12096	491 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	YLR125W	Q12138	136 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	RPL11A	P0C0W9	174 aa	Known RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	PRP6	P19735	899 aa	Predicted RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	CDC11	P32458	415 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	LYP1	P32487	611 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	SLA2	P33338	968 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	SPO21	Q12411	609 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	RPL11B	Q3E757	174 aa	Predicted RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	DED1	P06634	604 aa	Known RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	RNQ1	P25367	405 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	ABD1	P32783	436 aa	Predicted RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	POL12	P38121	705 aa	Predicted RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	PAF1	P38351	445 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	YDR132C	Q03900	495 aa		3.01	□□□□□ -1.93
SNU114	YKL173W	FAL1	Q12099	399 aa	Known RBP	3.01	□□□□□ -1.93
SNU114	YKL173W	BAS1	P22035	811 aa		3	□□□□□ -1.93
SNU114	YKL173W	YKL151C	P36059	337 aa		3	□□□□□ -1.93
SNU114	YKL173W	GTS1	P40956	396 aa		3	□□□□□ -1.93
SNU114	YKL173W	GPG1	P53130	126 aa		3	□□□□□ -1.93
SNU114	YKL173W	YGL081W	P53156	320 aa		3	□□□□□ -1.93
SNU114	YKL173W	YGR125W	P53273	1036 aa		3	□□□□□ -1.93
SNU114	YKL173W	TNA1	P53322	534 aa		3	□□□□□ -1.93
SNU114	YKL173W	SVL3	Q03088	825 aa	Known RBP	3	□□□□□ -1.93
SNU114	YKL173W	FMP25	Q08023	583 aa		3	□□□□□ -1.93
SNU114	YKL173W	NTG2	Q08214	380 aa		3	□□□□□ -1.93
SNU114	YKL173W	CDC6	P09119	513 aa		3	□□□□□ -1.93
SNU114	YKL173W	THI4	P32318	326 aa		3	□□□□□ -1.93
SNU114	YKL173W	VBA5	P36172	582 aa		3	□□□□□ -1.93
SNU114	YKL173W	CRP1	P38845	465 aa	Known RBP	3	□□□□□ -1.93
SNU114	YKL173W	YJR120W	P47157	116 aa		3	□□□□□ -1.93
SNU114	YKL173W	HNT2	P49775	206 aa		3	□□□□□ -1.93
SNU114	YKL173W	YRB30	P53107	440 aa	Predicted RBP	3	□□□□□ -1.93
SNU114	YKL173W	SIZ1	Q04195	904 aa		3	□□□□□ -1.93
SNU114	YKL173W	HAP1	P0CE41	1502 aa		3	□□□□□ -1.93
SNU114	YKL173W	ACE2	P21192	770 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	AGP1	P25376	633 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	UGA2	P38067	497 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	SEC26	P41810	973 aa	Known RBP	2.99	□□□□□ -1.93
SNU114	YKL173W	PEX8	P53248	589 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	SHE9	Q04172	456 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	UTP14	Q04500	899 aa	Known RBP	2.99	□□□□□ -1.93
SNU114	YKL173W	NSI1	Q12457	570 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	MSH2	P25847	964 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	MRPL22	P53881	309 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	TGL2	P54857	326 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	DUS4	Q06063	367 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	RKM4	Q12504	494 aa		2.99	□□□□□ -1.93
SNU114	YKL173W	ADR1	P07248	1323 aa		2.99	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 76.2 ms