RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W MXR1P40029 184 aa7.17□□□□□ -1.26
PRP40YKL012W SRP1Q02821 542 aaKnown RBP7.17□□□□□ -1.26
PRP40YKL012W BUL2Q03758 920 aaKnown RBP7.17□□□□□ -1.26
PRP40YKL012W SEC26P41810 973 aaKnown RBP7.16□□□□□ -1.26
PRP40YKL012W KIP3P53086 805 aaKnown RBP7.16□□□□□ -1.26
PRP40YKL012W DOT1Q04089 582 aaKnown RBP7.16□□□□□ -1.26
PRP40YKL012W YLR257WQ06146 321 aaKnown RBP7.16□□□□□ -1.26
PRP40YKL012W NHA1Q99271 985 aa7.16□□□□□ -1.26
PRP40YKL012W NUP145P49687 1317 aa7.16□□□□□ -1.26
PRP40YKL012W PHR1P05066 565 aaKnown RBP RIP-Chip data7.15□□□□□ -1.26not detected
PRP40YKL012W CDC12P32468 407 aaKnown RBP7.15□□□□□ -1.26
PRP40YKL012W NNK1P36003 928 aa7.15□□□□□ -1.26
PRP40YKL012W YRO2P38079 344 aa7.15□□□□□ -1.26
PRP40YKL012W SDA1P53313 767 aaKnown RBP7.15□□□□□ -1.26
PRP40YKL012W UME1Q03010 460 aa7.15□□□□□ -1.26
PRP40YKL012W TMA17Q12513 150 aa7.15□□□□□ -1.26
PRP40YKL012W AFR1P33304 620 aa7.15□□□□□ -1.27
PRP40YKL012W GPB2P39717 880 aa7.15□□□□□ -1.27
PRP40YKL012W RPN3P40016 523 aaKnown RBP7.15□□□□□ -1.27
PRP40YKL012W CAF120P53836 1060 aa7.15□□□□□ -1.27
PRP40YKL012W ACM1Q08981 209 aa7.15□□□□□ -1.27
PRP40YKL012W GPG1P53130 126 aa7.14□□□□□ -1.27
PRP40YKL012W SMY2P32909 740 aaKnown RBP7.13□□□□□ -1.27
PRP40YKL012W SPC29P33419 253 aa7.13□□□□□ -1.27
PRP40YKL012W ALO1P54783 526 aaKnown RBP7.13□□□□□ -1.27
PRP40YKL012W HRK1Q08732 759 aaKnown RBP7.13□□□□□ -1.27
PRP40YKL012W CDC9P04819 755 aa7.13□□□□□ -1.27
PRP40YKL012W SLA2P33338 968 aa7.13□□□□□ -1.27
PRP40YKL012W SAH1P39954 449 aaKnown RBP7.13□□□□□ -1.27
PRP40YKL012W MGS1P40151 587 aa7.13□□□□□ -1.27
PRP40YKL012W TOK1P40310 691 aa7.13□□□□□ -1.27
PRP40YKL012W YJL045WP47052 634 aa7.12□□□□□ -1.27
PRP40YKL012W PEX8P53248 589 aa7.12□□□□□ -1.27
PRP40YKL012W SRD1P09007 221 aa7.11□□□□□ -1.27
PRP40YKL012W REC104P33323 182 aa7.11□□□□□ -1.27
PRP40YKL012W YEL1P34225 687 aa7.11□□□□□ -1.27
PRP40YKL012W YKL151CP36059 337 aa7.11□□□□□ -1.27
PRP40YKL012W NCE103P53615 221 aa7.11□□□□□ -1.27
PRP40YKL012W HRQ1Q05549 1077 aa7.11□□□□□ -1.27
PRP40YKL012W FAP7Q12055 197 aaPredicted RBP7.11□□□□□ -1.27
PRP40YKL012W NPP1P25353 742 aa7.1□□□□□ -1.27
PRP40YKL012W PRO1P32264 428 aa7.1□□□□□ -1.27
PRP40YKL012W ERT1P38140 529 aa7.1□□□□□ -1.27
PRP40YKL012W JJJ3P47138 172 aa7.1□□□□□ -1.27
PRP40YKL012W YJR120WP47157 116 aa7.1□□□□□ -1.27
PRP40YKL012W CCM1P48237 864 aaPredicted RBP7.1□□□□□ -1.27
PRP40YKL012W HOS3Q02959 697 aaKnown RBP7.1□□□□□ -1.27
PRP40YKL012W PCL2P25693 308 aa7.1□□□□□ -1.27
PRP40YKL012W GPT2P36148 743 aa7.1□□□□□ -1.27
PRP40YKL012W TYS1P36421 394 aaKnown RBP7.1□□□□□ -1.27
PRP40YKL012W BAP2P38084 609 aa7.1□□□□□ -1.27
PRP40YKL012W NMD3P38861 518 aaKnown RBP7.1□□□□□ -1.27
PRP40YKL012W GYP8P43570 497 aa7.1□□□□□ -1.27
PRP40YKL012W YGR283CP53336 341 aaPredicted RBP7.1□□□□□ -1.27
PRP40YKL012W MTC5Q03897 1148 aa7.1□□□□□ -1.27
PRP40YKL012W MTC2P34246 357 aa7.09□□□□□ -1.27
PRP40YKL012W UGA2P38067 497 aa7.09□□□□□ -1.27
PRP40YKL012W YSC84P32793 468 aa7.08□□□□□ -1.28
PRP40YKL012W RRM3P38766 723 aa7.08□□□□□ -1.28
PRP40YKL012W YLL058WQ12198 575 aa7.08□□□□□ -1.28
PRP40YKL012W THS1P04801 734 aaKnown RBP7.08□□□□□ -1.28
PRP40YKL012W RAD18P10862 487 aa7.08□□□□□ -1.28
PRP40YKL012W SEC6P32844 805 aa7.08□□□□□ -1.28
PRP40YKL012W YFL054CP43549 646 aa7.08□□□□□ -1.28
PRP40YKL012W ALT1P52893 592 aa7.08□□□□□ -1.28
PRP40YKL012W MET13P53128 600 aa7.08□□□□□ -1.28
PRP40YKL012W DAM1P53267 343 aa7.08□□□□□ -1.28
PRP40YKL012W HFD1Q04458 532 aa7.08□□□□□ -1.28
PRP40YKL012W TY1A-NL1Q12391 440 aaKnown RBP7.08□□□□□ -1.28
PRP40YKL012W YKR078WP36158 585 aaKnown RBP7.07□□□□□ -1.28
PRP40YKL012W GPP1P41277 250 aaKnown RBP7.07□□□□□ -1.28
PRP40YKL012W CAF16P43569 289 aa7.07□□□□□ -1.28
PRP40YKL012W TY4A-JP47023 414 aa7.07□□□□□ -1.28
PRP40YKL012W TNA1P53322 534 aa7.07□□□□□ -1.28
PRP40YKL012W ATP25Q03153 612 aa7.07□□□□□ -1.28
PRP40YKL012W RSC3Q06639 885 aa7.07□□□□□ -1.28
PRP40YKL012W PUS7Q08647 676 aaKnown RBP7.07□□□□□ -1.28
PRP40YKL012W SNF5P18480 905 aa7.06□□□□□ -1.28
PRP40YKL012W SFL1P20134 766 aa7.06□□□□□ -1.28
PRP40YKL012W EMC3P36039 253 aa7.06□□□□□ -1.28
PRP40YKL012W YBR071WP38243 211 aa7.06□□□□□ -1.28
PRP40YKL012W TSL1P38427 1098 aaKnown RBP7.06□□□□□ -1.28
PRP40YKL012W NIT1P40447 199 aa7.06□□□□□ -1.28
PRP40YKL012W GYP7P48365 746 aa7.06□□□□□ -1.28
PRP40YKL012W SUB1P54000 292 aaKnown RBP7.06□□□□□ -1.28
PRP40YKL012W TPP1Q03796 238 aa7.06□□□□□ -1.28
PRP40YKL012W MTQ2Q03920 221 aaPredicted RBP7.06□□□□□ -1.28
PRP40YKL012W EUG1P32474 517 aa7.05□□□□□ -1.28
PRP40YKL012W STO1P34160 861 aaKnown RBP7.05□□□□□ -1.28
PRP40YKL012W PMC1P38929 1173 aaPredicted RBP7.05□□□□□ -1.28
PRP40YKL012W MDM38Q08179 573 aa7.05□□□□□ -1.28
PRP40YKL012W ENV7Q12003 364 aa7.05□□□□□ -1.28
PRP40YKL012W COG6P53959 839 aa7.05□□□□□ -1.28
PRP40YKL012W COG8Q04632 607 aa7.05□□□□□ -1.28
PRP40YKL012W DPH6Q12429 685 aa7.05□□□□□ -1.28
PRP40YKL012W TMA7Q3E764 64 aaKnown RBP7.05□□□□□ -1.28
PRP40YKL012W SWE1P32944 819 aa7.04□□□□□ -1.28
PRP40YKL012W MET7Q08645 548 aa7.04□□□□□ -1.28
PRP40YKL012W SLX4Q12098 748 aa7.04□□□□□ -1.28
PRP40YKL012W BI4P03879 638 aa7.03□□□□□ -1.28
Retrieved 100 of 5,963 RNA–protein pairs in 96.7 ms