RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN1	YHR027C	MSH2	P25847	964 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	SMY2	P32909	740 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	SLA2	P33338	968 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	STE13	P33894	931 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	UTP11	P34247	250 aa	Predicted RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	BOI1	P38041	980 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	YHR020W	P38708	688 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	NMD3	P38861	518 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	FCY21	P40039	528 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	KAP123	P40069	1113 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	ATG3	P40344	310 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	VTC2	P43585	828 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	FYV8	P46949	817 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	DAS1	P47005	663 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	ENP2	P48234	707 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	HFM1	P51979	1187 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	ERP6	P53198	216 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	CIK1	Q01649	594 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	TSR2	Q06672	205 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	NUR1	Q12066	484 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	OSH2	Q12451	1283 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	CEX1	Q12453	761 aa		3.37	□□□□□ -1.87
RPN1	YHR027C	LSO2	Q3E772	92 aa	Known RBP	3.37	□□□□□ -1.87
RPN1	YHR027C	LEU1	P07264	779 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	RAD53	P22216	821 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	HSP30	P25619	332 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	MGM1	P32266	881 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	PLC1	P32383	869 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	SEC8	P32855	1065 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	STO1	P34160	861 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	MNN2	P38069	597 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	KIC1	P38692	1080 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	RRM3	P38766	723 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	YER130C	P39959	443 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	TFG2	P41896	400 aa	Predicted RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	ZDS1	P50111	915 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	ECM11	Q04110	302 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	GPN2	Q08726	347 aa	Predicted RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	IES3	Q12345	250 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	BBP1	Q12365	385 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	YBL113C	Q7M4S9	792 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	PDE2	P06776	526 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	YML002W	P0CF17	737 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	KGD2	P19262	463 aa	Predicted RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	PHO13	P19881	312 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	SCT1	P32784	759 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	PEX5	P35056	612 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	TRZ1	P36159	838 aa	Predicted RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	SPP381	P38282	291 aa	Predicted RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	HXT5	P38695	592 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	GCD10	P41814	478 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	COG6	P53959	839 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	RMD1	Q03441	430 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.36	□□□□□ -1.87	not detected
RPN1	YHR027C	FAP7	Q12055	197 aa	Predicted RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	RIB2	Q12362	591 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	ENO2	P00925	437 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	UBA1	P22515	1024 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	TSR4	P25040	408 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	RDS1	P25611	832 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	SEC21	P32074	935 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	PPH3	P32345	308 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	MRE11	P32829	692 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	DUR3	P33413	735 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	UIP5	P36137	443 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	PGM2	P37012	569 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	TMN3	P40071	706 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	FTR1	P40088	404 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	YJR008W	P47085	338 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	HOP2	P53187	214 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	RAT1	Q02792	1006 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	SWP1	Q02795	286 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	NSE1	Q07913	336 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	NOB1	Q08444	459 aa	Known RBP	3.36	□□□□□ -1.87
RPN1	YHR027C	YPL150W	Q12152	901 aa		3.36	□□□□□ -1.87
RPN1	YHR027C	ENO1	P00924	437 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	CPA2	P03965	1118 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	TOM70	P07213	617 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	PIF1	P07271	859 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	FUS1	P11710	512 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	SSE1	P32589	693 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	YKL091C	P33324	310 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	RCN1	P36054	211 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	PHB1	P40961	287 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	IOC3	P43596	787 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	YGL176C	P46945	554 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	ALT1	P52893	592 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	PEX14	P53112	341 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	MON1	P53129	644 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	DCP2	P53550	970 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	ELA1	P53861	379 aa	Predicted RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	GTR1	Q00582	310 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	ULP1	Q02724	621 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	SYF1	Q04048	859 aa	Predicted RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	RRN11	Q04712	507 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	COX20	Q04935	205 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	NNT1	Q05874	261 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	SMD2	Q06217	110 aa	Known RBP	3.35	□□□□□ -1.87
RPN1	YHR027C	OPY2	Q06810	360 aa		3.35	□□□□□ -1.87
RPN1	YHR027C	SOG2	Q08817	791 aa		3.35	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 136.7 ms