RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	UGA2	P38067	497 aa		4.87	□□□□□ -1.63
RTR1	YER139C	MXR1	P40029	184 aa		4.87	□□□□□ -1.63
RTR1	YER139C	ADY3	Q07732	790 aa		4.87	□□□□□ -1.63
RTR1	YER139C	HRR25	P29295	494 aa	Known RBP	4.86	□□□□□ -1.63
RTR1	YER139C	OAR1	P35731	278 aa		4.86	□□□□□ -1.63
RTR1	YER139C	MOH1	P38191	138 aa		4.86	□□□□□ -1.63
RTR1	YER139C	MPH1	P40562	993 aa		4.86	□□□□□ -1.63
RTR1	YER139C	POA1	P38218	177 aa		4.85	□□□□□ -1.63
RTR1	YER139C	RRT14	P40470	206 aa		4.85	□□□□□ -1.63
RTR1	YER139C	MET12	P46151	657 aa		4.85	□□□□□ -1.63
RTR1	YER139C	HFM1	P51979	1187 aa		4.85	□□□□□ -1.63
RTR1	YER139C	RAD2	P07276	1031 aa		4.84	□□□□□ -1.63
RTR1	YER139C	RPL11A	P0C0W9	174 aa	Known RBP	4.84	□□□□□ -1.63
RTR1	YER139C	IOC3	P43596	787 aa		4.84	□□□□□ -1.63
RTR1	YER139C	EXG2	P52911	562 aa		4.84	□□□□□ -1.63
RTR1	YER139C	RPL11B	Q3E757	174 aa	Predicted RBP	4.84	□□□□□ -1.63
RTR1	YER139C	HIS5	P07172	385 aa		4.83	□□□□□ -1.64
RTR1	YER139C	PFK1	P16861	987 aa	Known RBP	4.83	□□□□□ -1.64
RTR1	YER139C	MCM7	P38132	845 aa		4.83	□□□□□ -1.64
RTR1	YER139C	ZRG8	P40021	1076 aa		4.83	□□□□□ -1.64
RTR1	YER139C	XYL2	Q07993	356 aa		4.83	□□□□□ -1.64
RTR1	YER139C	AIM39	Q08223	395 aa		4.83	□□□□□ -1.64
RTR1	YER139C	ACM1	Q08981	209 aa		4.83	□□□□□ -1.64
RTR1	YER139C	ENA1	P13587	1091 aa		4.82	□□□□□ -1.64
RTR1	YER139C	DBP2	P24783	546 aa	Known RBP	4.82	□□□□□ -1.64
RTR1	YER139C	SLA2	P33338	968 aa		4.82	□□□□□ -1.64
RTR1	YER139C	ENA2	Q01896	1091 aa		4.82	□□□□□ -1.64
RTR1	YER139C	GNT1	Q12096	491 aa		4.82	□□□□□ -1.64
RTR1	YER139C	KCS1	Q12494	1050 aa		4.82	□□□□□ -1.64
RTR1	YER139C	ENA5	Q12691	1091 aa		4.82	□□□□□ -1.64
RTR1	YER139C	GCR1	P07261	785 aa		4.81	□□□□□ -1.64
RTR1	YER139C	CYC8	P14922	966 aa		4.81	□□□□□ -1.64
RTR1	YER139C	UBA2	P52488	636 aa		4.81	□□□□□ -1.64
RTR1	YER139C	TIF35	Q04067	274 aa	Known RBP	4.81	□□□□□ -1.64
RTR1	YER139C	RPS26A	P39938	119 aa	Known RBP	4.8	□□□□□ -1.64
RTR1	YER139C	RPS26B	P39939	119 aa	Known RBP	4.8	□□□□□ -1.64
RTR1	YER139C	CHA4	P43634	648 aa		4.8	□□□□□ -1.64
RTR1	YER139C	SEC20	P28791	383 aa		4.78	□□□□□ -1.64
RTR1	YER139C	RER2	P35196	286 aa		4.78	□□□□□ -1.64
RTR1	YER139C	IPL1	P38991	367 aa		4.78	□□□□□ -1.64
RTR1	YER139C	GEM1	P39722	662 aa		4.78	□□□□□ -1.64
RTR1	YER139C	LAS17	Q12446	633 aa		4.78	□□□□□ -1.64
RTR1	YER139C	THS1	P04801	734 aa	Known RBP	4.76	□□□□□ -1.65
RTR1	YER139C	RPP2A	P05319	106 aa	Known RBP	4.76	□□□□□ -1.65
RTR1	YER139C	PNT1	P38969	423 aa		4.76	□□□□□ -1.65
RTR1	YER139C	MTC3	P53077	123 aa		4.76	□□□□□ -1.65
RTR1	YER139C	NPC2	Q12408	173 aa		4.76	□□□□□ -1.65
RTR1	YER139C	YAP1801	P38856	637 aa		4.75	□□□□□ -1.65
RTR1	YER139C	BUL1	P48524	976 aa		4.75	□□□□□ -1.65
RTR1	YER139C	YGR012W	P53206	393 aa		4.75	□□□□□ -1.65
RTR1	YER139C	YLR040C	Q07988	224 aa		4.75	□□□□□ -1.65
RTR1	YER139C	SPE1	P08432	466 aa		4.74	□□□□□ -1.65
RTR1	YER139C	MCM2	P29469	868 aa		4.74	□□□□□ -1.65
RTR1	YER139C	ATF1	P40353	525 aa		4.74	□□□□□ -1.65
RTR1	YER139C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.74	□□□□□ -1.65	not detected
RTR1	YER139C	SPP382	Q06411	708 aa	Predicted RBP	4.74	□□□□□ -1.65
RTR1	YER139C	CDA1	Q06702	301 aa		4.74	□□□□□ -1.65
RTR1	YER139C	ENB1	Q08299	606 aa		4.74	□□□□□ -1.65
RTR1	YER139C	EFT1	P32324	842 aa	Known RBP	4.73	□□□□□ -1.65
RTR1	YER139C	SRP101	P32916	621 aa		4.73	□□□□□ -1.65
RTR1	YER139C	OSW2	Q12202	724 aa		4.73	□□□□□ -1.65
RTR1	YER139C	YOL073C	Q08232	322 aa		4.72	□□□□□ -1.65
RTR1	YER139C	RAD27	P26793	382 aa		4.71	□□□□□ -1.66
RTR1	YER139C	SUL1	P38359	859 aa		4.71	□□□□□ -1.66
RTR1	YER139C	CCC2	P38995	1004 aa		4.71	□□□□□ -1.66
RTR1	YER139C	NCS6	P53088	359 aa		4.71	□□□□□ -1.66
RTR1	YER139C	SPR28	Q04921	423 aa		4.71	□□□□□ -1.66
RTR1	YER139C	KAR4	P25583	335 aa		4.7	□□□□□ -1.66
RTR1	YER139C	QRI1	P43123	477 aa	Known RBP	4.7	□□□□□ -1.66
RTR1	YER139C	TMN2	Q04562	672 aa		4.7	□□□□□ -1.66
RTR1	YER139C	RTT10	Q08924	1013 aa		4.7	□□□□□ -1.66
RTR1	YER139C	YPL066W	Q12194	479 aa		4.7	□□□□□ -1.66
RTR1	YER139C	URM1	P40554	99 aa	Predicted RBP	4.69	□□□□□ -1.66
RTR1	YER139C	PSP2	P50109	593 aa	Known RBP	4.69	□□□□□ -1.66
RTR1	YER139C	LGE1	Q02796	332 aa	Known RBP	4.69	□□□□□ -1.66
RTR1	YER139C	BDF2	Q07442	638 aa		4.69	□□□□□ -1.66
RTR1	YER139C	MCH5	Q08777	521 aa		4.69	□□□□□ -1.66
RTR1	YER139C	TRP2	P00899	507 aa	Known RBP	4.68	□□□□□ -1.66
RTR1	YER139C	MOT2	P34909	587 aa	Known RBP	4.68	□□□□□ -1.66
RTR1	YER139C	YKL151C	P36059	337 aa		4.68	□□□□□ -1.66
RTR1	YER139C	FYV10	P40492	516 aa		4.68	□□□□□ -1.66
RTR1	YER139C	STU2	P46675	888 aa		4.68	□□□□□ -1.66
RTR1	YER139C	HRQ1	Q05549	1077 aa		4.68	□□□□□ -1.66
RTR1	YER139C	WHI4	Q07655	649 aa	Known RBP	4.68	□□□□□ -1.66
RTR1	YER139C	MDM38	Q08179	573 aa		4.68	□□□□□ -1.66
RTR1	YER139C	LYP1	P32487	611 aa		4.67	□□□□□ -1.66
RTR1	YER139C	ECM21	P38167	1117 aa	Known RBP	4.67	□□□□□ -1.66
RTR1	YER139C	STB4	P50104	949 aa		4.67	□□□□□ -1.66
RTR1	YER139C	SEN54	Q02825	467 aa	Predicted RBP	4.67	□□□□□ -1.66
RTR1	YER139C	YMR206W	Q03695	313 aa		4.67	□□□□□ -1.66
RTR1	YER139C	OMS1	Q06668	471 aa		4.67	□□□□□ -1.66
RTR1	YER139C	HSF1	P10961	833 aa		4.66	□□□□□ -1.66
RTR1	YER139C	INO1	P11986	533 aa		4.66	□□□□□ -1.66
RTR1	YER139C	CAD1	P24813	409 aa	Known RBP	4.66	□□□□□ -1.66
RTR1	YER139C	MGE1	P38523	228 aa		4.66	□□□□□ -1.66
RTR1	YER139C	GIC1	P38785	314 aa		4.66	□□□□□ -1.66
RTR1	YER139C	SRT1	Q03175	343 aa		4.66	□□□□□ -1.66
RTR1	YER139C	YLL058W	Q12198	575 aa		4.66	□□□□□ -1.66
RTR1	YER139C	KTR4	P38131	464 aa		4.65	□□□□□ -1.67
RTR1	YER139C	SNM1	P40993	198 aa		4.65	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 75.5 ms