RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	ALG3	P38179	458 aa		4.09	□□□□□ -1.75
SMB1	YER029C	RTT10	Q08924	1013 aa		4.09	□□□□□ -1.75
SMB1	YER029C	HMI1	Q12039	706 aa		4.09	□□□□□ -1.75
SMB1	YER029C	CDC34	P14682	295 aa		4.08	□□□□□ -1.76
SMB1	YER029C	DBP5	P20449	482 aa	Known RBP	4.08	□□□□□ -1.76
SMB1	YER029C	EMC1	P25574	760 aa		4.08	□□□□□ -1.76
SMB1	YER029C	PEP7	P32609	515 aa		4.08	□□□□□ -1.76
SMB1	YER029C	RER2	P35196	286 aa		4.08	□□□□□ -1.76
SMB1	YER029C	MET10	P39692	1035 aa		4.08	□□□□□ -1.76
SMB1	YER029C	EEB1	Q02891	456 aa		4.08	□□□□□ -1.76
SMB1	YER029C	NOP12	Q08208	459 aa	Known RBP	4.08	□□□□□ -1.76
SMB1	YER029C	YPL260W	Q08977	551 aa		4.08	□□□□□ -1.76
SMB1	YER029C	APL1	P27351	700 aa		4.07	□□□□□ -1.76
SMB1	YER029C	PET112	P33893	541 aa		4.07	□□□□□ -1.76
SMB1	YER029C	MOH1	P38191	138 aa		4.07	□□□□□ -1.76
SMB1	YER029C	MPH1	P40562	993 aa		4.07	□□□□□ -1.76
SMB1	YER029C	UBA2	P52488	636 aa		4.07	□□□□□ -1.76
SMB1	YER029C	SVS1	Q12254	260 aa		4.07	□□□□□ -1.76
SMB1	YER029C	SYP1	P25623	870 aa	Known RBP	4.06	□□□□□ -1.76
SMB1	YER029C	MNR2	P35724	969 aa		4.06	□□□□□ -1.76
SMB1	YER029C	SNM1	P40993	198 aa		4.06	□□□□□ -1.76
SMB1	YER029C	CNN1	P43618	361 aa		4.06	□□□□□ -1.76
SMB1	YER029C	GCV2	P49095	1034 aa		4.06	□□□□□ -1.76
SMB1	YER029C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
SMB1	YER029C	TIF35	Q04067	274 aa	Known RBP	4.06	□□□□□ -1.76
SMB1	YER029C	SIZ1	Q04195	904 aa		4.06	□□□□□ -1.76
SMB1	YER029C	PAM1	P37304	830 aa	Known RBP	4.05	□□□□□ -1.76
SMB1	YER029C	RGD1	P38339	666 aa		4.05	□□□□□ -1.76
SMB1	YER029C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
SMB1	YER029C	TRP2	P00899	507 aa	Known RBP	4.04	□□□□□ -1.76
SMB1	YER029C	YER152C	P10356	443 aa		4.04	□□□□□ -1.76
SMB1	YER029C	LYP1	P32487	611 aa		4.04	□□□□□ -1.76
SMB1	YER029C	PLB1	P39105	664 aa		4.04	□□□□□ -1.76
SMB1	YER029C	YFL054C	P43549	646 aa		4.04	□□□□□ -1.76
SMB1	YER029C	IOC3	P43596	787 aa		4.04	□□□□□ -1.76
SMB1	YER029C	VPS16	Q03308	798 aa		4.04	□□□□□ -1.76
SMB1	YER029C	SVF1	Q05515	481 aa		4.04	□□□□□ -1.76
SMB1	YER029C	MLS1	P30952	554 aa		4.03	□□□□□ -1.76
SMB1	YER029C	ATF1	P40353	525 aa		4.03	□□□□□ -1.76
SMB1	YER029C	FAA4	P47912	694 aa	Known RBP	4.03	□□□□□ -1.76
SMB1	YER029C	YGR053C	P53234	283 aa		4.03	□□□□□ -1.76
SMB1	YER029C	BDF2	Q07442	638 aa		4.03	□□□□□ -1.76
SMB1	YER029C	TMA46	Q12000	345 aa	Known RBP	4.03	□□□□□ -1.76
SMB1	YER029C	PIN2	Q12057	282 aa		4.03	□□□□□ -1.76
SMB1	YER029C	YPL066W	Q12194	479 aa		4.03	□□□□□ -1.76
SMB1	YER029C	RAD27	P26793	382 aa		4.02	□□□□□ -1.77
SMB1	YER029C	HRR25	P29295	494 aa	Known RBP	4.02	□□□□□ -1.77
SMB1	YER029C	SIP5	P40210	489 aa	Known RBP	4.02	□□□□□ -1.77
SMB1	YER029C	AIM39	Q08223	395 aa		4.02	□□□□□ -1.77
SMB1	YER029C	SNU71	P53207	620 aa	Known RBP	4.01	□□□□□ -1.77
SMB1	YER029C	MSC2	Q03455	724 aa		4.01	□□□□□ -1.77
SMB1	YER029C	GNT1	Q12096	491 aa		4.01	□□□□□ -1.77
SMB1	YER029C	INO1	P11986	533 aa		4	□□□□□ -1.77
SMB1	YER029C	MOT2	P34909	587 aa	Known RBP	4	□□□□□ -1.77
SMB1	YER029C	ESC2	Q06340	456 aa		4	□□□□□ -1.77
SMB1	YER029C	PFK1	P16861	987 aa	Known RBP	3.99	□□□□□ -1.77
SMB1	YER029C	CLN2	P20438	545 aa		3.99	□□□□□ -1.77
SMB1	YER029C	DBP2	P24783	546 aa	Known RBP	3.99	□□□□□ -1.77
SMB1	YER029C	MCM7	P38132	845 aa		3.99	□□□□□ -1.77
SMB1	YER029C	PNT1	P38969	423 aa		3.99	□□□□□ -1.77
SMB1	YER029C	TYW3	P53177	273 aa		3.99	□□□□□ -1.77
SMB1	YER029C	LGE1	Q02796	332 aa	Known RBP	3.99	□□□□□ -1.77
SMB1	YER029C	JIP5	Q06214	492 aa	Predicted RBP	3.99	□□□□□ -1.77
SMB1	YER029C	ATG13	Q06628	738 aa		3.99	□□□□□ -1.77
SMB1	YER029C	RPL11A	P0C0W9	174 aa	Known RBP	3.98	□□□□□ -1.77
SMB1	YER029C	SLA2	P33338	968 aa		3.98	□□□□□ -1.77
SMB1	YER029C	MXR1	P40029	184 aa		3.98	□□□□□ -1.77
SMB1	YER029C	MND2	P40577	368 aa		3.98	□□□□□ -1.77
SMB1	YER029C	GDE1	Q02979	1223 aa		3.98	□□□□□ -1.77
SMB1	YER029C	RKM4	Q12504	494 aa		3.98	□□□□□ -1.77
SMB1	YER029C	RPL11B	Q3E757	174 aa	Predicted RBP	3.98	□□□□□ -1.77
SMB1	YER029C	YKL069W	P36088	180 aa		3.97	□□□□□ -1.77
SMB1	YER029C	EXG2	P52911	562 aa		3.97	□□□□□ -1.77
SMB1	YER029C	TPO1	Q07824	586 aa		3.97	□□□□□ -1.77
SMB1	YER029C	BAS1	P22035	811 aa		3.96	□□□□□ -1.78
SMB1	YER029C	NAP1	P25293	417 aa	Known RBP	3.96	□□□□□ -1.78
SMB1	YER029C	POA1	P38218	177 aa		3.96	□□□□□ -1.78
SMB1	YER029C	MAD1	P40957	749 aa		3.96	□□□□□ -1.78
SMB1	YER029C	MET12	P46151	657 aa		3.96	□□□□□ -1.78
SMB1	YER029C	STU2	P46675	888 aa		3.96	□□□□□ -1.78
SMB1	YER029C	YLR225C	Q05948	407 aa	Known RBP	3.96	□□□□□ -1.78
SMB1	YER029C	HIS5	P07172	385 aa		3.95	□□□□□ -1.78
SMB1	YER029C	AGP1	P25376	633 aa		3.95	□□□□□ -1.78
SMB1	YER029C	ABD1	P32783	436 aa	Predicted RBP	3.95	□□□□□ -1.78
SMB1	YER029C	YKL107W	P34251	309 aa		3.95	□□□□□ -1.78
SMB1	YER029C	QRI1	P43123	477 aa	Known RBP	3.95	□□□□□ -1.78
SMB1	YER029C	YGL176C	P46945	554 aa		3.95	□□□□□ -1.78
SMB1	YER029C	ALD6	P54115	500 aa	Known RBP	3.95	□□□□□ -1.78
SMB1	YER029C	SPO20	Q04359	397 aa		3.95	□□□□□ -1.78
SMB1	YER029C	ADY3	Q07732	790 aa		3.95	□□□□□ -1.78
SMB1	YER029C	OPI10	Q08202	246 aa		3.95	□□□□□ -1.78
SMB1	YER029C	ACM1	Q08981	209 aa		3.95	□□□□□ -1.78
SMB1	YER029C	BI4	P03879	638 aa		3.94	□□□□□ -1.78
SMB1	YER029C	ACE2	P21192	770 aa		3.94	□□□□□ -1.78
SMB1	YER029C	SBA1	P28707	216 aa	Known RBP	3.94	□□□□□ -1.78
SMB1	YER029C	YKL151C	P36059	337 aa		3.94	□□□□□ -1.78
SMB1	YER029C	CUE2	P36075	443 aa	Known RBP	3.94	□□□□□ -1.78
SMB1	YER029C	UGA2	P38067	497 aa		3.94	□□□□□ -1.78
SMB1	YER029C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	3.94	□□□□□ -1.78	not detected
SMB1	YER029C	RPP2A	P05319	106 aa	Known RBP	3.93	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 31.8 ms