RNA–Protein interactions for RNA: YDL074C

BRE1, Transcript of E3 ubiquitin ligase, yeast

Gene BRE1, Length 2,103 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE1	YDL074C	ASH1	P34233	588 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	YKR018C	P36114	725 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	MCX1	P38323	520 aa	Predicted RBP	2.32	□□□□□ -2.04
BRE1	YDL074C	UBA2	P52488	636 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	VID30	P53076	958 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	CAF120	P53836	1060 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	OYE2	Q03558	400 aa	Known RBP	2.32	□□□□□ -2.04
BRE1	YDL074C	BUL2	Q03758	920 aa	Known RBP	2.32	□□□□□ -2.04
BRE1	YDL074C	TRS120	Q04183	1289 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	YDL124W	Q07551	312 aa	Known RBP	2.32	□□□□□ -2.04
BRE1	YDL074C	NEW1	Q08972	1196 aa	Known RBP	2.32	□□□□□ -2.04
BRE1	YDL074C	PTC5	Q12511	572 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	TUS1	Q06412	1307 aa		2.32	□□□□□ -2.04
BRE1	YDL074C	FLO1	P32768	1537 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	TOP1	P04786	769 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	PMA1	P05030	918 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	PET123	P17558	318 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	ADP1	P25371	1049 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	MCM4	P30665	933 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	CNS1	P33313	385 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	YKL023W	P36103	277 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	ISW1	P38144	1129 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	YBL028C	P38202	106 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	TPS3	P38426	1054 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	NUP82	P40368	713 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	FYV10	P40492	516 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	MAD1	P40957	749 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	OSW7	P43611	510 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	CBK1	P53894	756 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	SSL2	Q00578	843 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	EBS1	Q03466	884 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	GIS4	Q04233	774 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	SML1	Q04964	104 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	YPR078C	Q06813	372 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	SUB2	Q07478	446 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	PSR2	Q07949	397 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	AFT2	Q08957	416 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	HMI1	Q12039	706 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	ATG9	Q12142	997 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	RRP6	Q12149	733 aa	Known RBP	2.31	□□□□□ -2.04
BRE1	YDL074C	OSH2	Q12451	1283 aa		2.31	□□□□□ -2.04
BRE1	YDL074C	MTF2	P10849	440 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	PCK1	P10963	549 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	SSB1	P11484	613 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	CAF20	P12962	161 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	STI1	P15705	589 aa	Known RBP RIP-Chip data	2.3	□□□□□ -2.04	not detected
BRE1	YDL074C	CKI1	P20485	582 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	VPS1	P21576	704 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	CDC60	P26637	1090 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	RPS7A	P26786	190 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	ICL1	P28240	557 aa	Predicted RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	YKL091C	P33324	310 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	PGM1	P33401	570 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	MNR2	P35724	969 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	CCT4	P39078	528 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	ACO2	P39533	789 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	BUD16	P39988	312 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	SSB2	P40150	613 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	ATG32	P40458	529 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	GSM1	P42950	618 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	YFL034W	P43564	1073 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	YGR153W	P48238	217 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	ASE1	P50275	885 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	GIR2	Q03768	265 aa	Predicted RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	RBA50	Q04418	439 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	CUR1	Q06469	252 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	VAC14	Q06708	880 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	MED1	Q12321	566 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	MIP1	P15801	1254 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	UBC1	P21734	215 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	PER1	P25625	357 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	SEC65	P29478	273 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	PRO3	P32263	286 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	SPT16	P32558	1035 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	AFG2	P32794	780 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	UBC6	P33296	250 aa	Predicted RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	YET1	P35723	206 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	PSY4	P38193	441 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	OLA1	P38219	394 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	REI1	P38344	393 aa	Predicted RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	MIP6	P38760	659 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	SPC72	P39723	622 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	HXT8	P40886	569 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	PTK2	P47116	818 aa	Known RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	YGR237C	P50089	785 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	CAF130	P53280	1122 aa	Predicted RBP	2.3	□□□□□ -2.04
BRE1	YDL074C	FPK1	P53739	893 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	TOF1	P53840	1238 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	HDA1	P53973	706 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	FUS2	Q05670	677 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	SPO75	Q07798	868 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	YAP7	Q08182	245 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	TMA16	Q08687	178 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	MET32	Q12041	191 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	DAS2	Q12084	232 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	YOL098C	Q12496	1037 aa		2.3	□□□□□ -2.04
BRE1	YDL074C	CDC8	P00572	216 aa		2.29	□□□□□ -2.04
BRE1	YDL074C	TCP1	P12612	559 aa	Known RBP	2.29	□□□□□ -2.04
BRE1	YDL074C	SRP54	P20424	541 aa	Known RBP	2.29	□□□□□ -2.04
BRE1	YDL074C	RPO26	P20435	155 aa		2.29	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms