RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C CDC8P00572 216 aa7.52□□□□□ -1.21
TDP1YBR223C ILV1P00927 576 aaKnown RBP7.52□□□□□ -1.21
TDP1YBR223C PAP1P29468 568 aaKnown RBP7.52□□□□□ -1.21
TDP1YBR223C MUD2P36084 527 aaKnown RBP7.52□□□□□ -1.21
TDP1YBR223C YBL028CP38202 106 aa7.52□□□□□ -1.21
TDP1YBR223C GDT1P38301 280 aaPredicted RBP7.52□□□□□ -1.21
TDP1YBR223C MIC19P43594 170 aa7.52□□□□□ -1.21
TDP1YBR223C ROG3P43602 733 aa7.52□□□□□ -1.21
TDP1YBR223C GUP1P53154 560 aa7.52□□□□□ -1.21
TDP1YBR223C YGR130CP53278 816 aa7.52□□□□□ -1.21
TDP1YBR223C SUE1Q06524 206 aa7.52□□□□□ -1.21
TDP1YBR223C YPR078CQ06813 372 aa7.52□□□□□ -1.21
TDP1YBR223C OXR1Q08952 273 aa7.52□□□□□ -1.21
TDP1YBR223C NUR1Q12066 484 aa7.52□□□□□ -1.21
TDP1YBR223C ADP1P25371 1049 aa7.51□□□□□ -1.21
TDP1YBR223C HXT1P32465 570 aa7.51□□□□□ -1.21
TDP1YBR223C SMC1P32908 1225 aa7.51□□□□□ -1.21
TDP1YBR223C SLD2P34252 453 aa7.51□□□□□ -1.21
TDP1YBR223C JNM1P36224 373 aa7.51□□□□□ -1.21
TDP1YBR223C SUL1P38359 859 aa7.51□□□□□ -1.21
TDP1YBR223C SIP3P38717 1229 aa7.51□□□□□ -1.21
TDP1YBR223C BIM1P40013 344 aa7.51□□□□□ -1.21
TDP1YBR223C MAD1P40957 749 aa7.51□□□□□ -1.21
TDP1YBR223C YFL034WP43564 1073 aa7.51□□□□□ -1.21
TDP1YBR223C CTK3P46963 296 aaPredicted RBP7.51□□□□□ -1.21
TDP1YBR223C YGL140CP53120 1219 aa7.51□□□□□ -1.21
TDP1YBR223C PGA2P53903 129 aa7.51□□□□□ -1.21
TDP1YBR223C YMR114CQ04471 368 aaKnown RBP7.51□□□□□ -1.21
TDP1YBR223C UTP4Q06679 776 aaKnown RBP7.51□□□□□ -1.21
TDP1YBR223C DAS2Q12084 232 aa7.51□□□□□ -1.21
TDP1YBR223C KIN1P13185 1064 aa7.5□□□□□ -1.21
TDP1YBR223C PFK1P16861 987 aaKnown RBP7.5□□□□□ -1.21
TDP1YBR223C ECM32P32644 1121 aaKnown RBP7.5□□□□□ -1.21
TDP1YBR223C ISW1P38144 1129 aa7.5□□□□□ -1.21
TDP1YBR223C RGD1P38339 666 aa7.5□□□□□ -1.21
TDP1YBR223C PIH1P38768 344 aa7.5□□□□□ -1.21
TDP1YBR223C NUP82P40368 713 aa7.5□□□□□ -1.21
TDP1YBR223C SNU71P53207 620 aaKnown RBP7.5□□□□□ -1.21
TDP1YBR223C CWC22P53333 577 aaKnown RBP7.5□□□□□ -1.21
TDP1YBR223C SEC5P89102 971 aa7.5□□□□□ -1.21
TDP1YBR223C POB3Q04636 552 aaKnown RBP7.5□□□□□ -1.21
TDP1YBR223C NOP6Q07623 225 aaKnown RBP7.5□□□□□ -1.21
TDP1YBR223C LAP2Q10740 671 aa7.5□□□□□ -1.21
TDP1YBR223C RMP1Q12530 201 aa7.5□□□□□ -1.21
TDP1YBR223C RAD1P06777 1100 aa7.49□□□□□ -1.21
TDP1YBR223C TUP1P16649 713 aa7.49□□□□□ -1.21
TDP1YBR223C RAD53P22216 821 aa7.49□□□□□ -1.21
TDP1YBR223C KIC1P38692 1080 aa7.49□□□□□ -1.21
TDP1YBR223C YJL171CP46992 396 aa7.49□□□□□ -1.21
TDP1YBR223C SGM1P47166 707 aa7.49□□□□□ -1.21
TDP1YBR223C TOF1P53840 1238 aa7.49□□□□□ -1.21
TDP1YBR223C AAD16Q02895 342 aa7.49□□□□□ -1.21
TDP1YBR223C TCO89Q08921 799 aa7.49□□□□□ -1.21
TDP1YBR223C PMA1P05030 918 aaKnown RBP7.49□□□□□ -1.21
TDP1YBR223C CTT1P06115 562 aa7.49□□□□□ -1.21
TDP1YBR223C GFA1P14742 717 aaKnown RBP7.49□□□□□ -1.21
TDP1YBR223C MRF1P30775 413 aaPredicted RBP7.49□□□□□ -1.21
TDP1YBR223C OLA1P38219 394 aaKnown RBP7.49□□□□□ -1.21
TDP1YBR223C PAN5P38787 379 aa7.49□□□□□ -1.21
TDP1YBR223C SET5P38890 526 aaKnown RBP7.49□□□□□ -1.21
TDP1YBR223C EAF6P47128 113 aa7.49□□□□□ -1.21
TDP1YBR223C TAD1P53065 400 aa7.49□□□□□ -1.21
TDP1YBR223C GIR2Q03768 265 aaPredicted RBP7.49□□□□□ -1.21
TDP1YBR223C CRF1Q04930 467 aa7.49□□□□□ -1.21
TDP1YBR223C MED1Q12321 566 aa7.49□□□□□ -1.21
TDP1YBR223C GSC2P40989 1895 aa7.48□□□□□ -1.21
TDP1YBR223C KTR2P33550 425 aa7.48□□□□□ -1.21
TDP1YBR223C MMM1P41800 426 aa7.48□□□□□ -1.21
TDP1YBR223C FMS1P50264 508 aa7.48□□□□□ -1.21
TDP1YBR223C NBP1P52919 319 aaPredicted RBP7.48□□□□□ -1.21
TDP1YBR223C VTC3Q02725 835 aa7.48□□□□□ -1.21
TDP1YBR223C OYE2Q03558 400 aaKnown RBP7.48□□□□□ -1.21
TDP1YBR223C VTI1Q04338 217 aa7.48□□□□□ -1.21
TDP1YBR223C FUS2Q05670 677 aa7.48□□□□□ -1.21
TDP1YBR223C TSR1Q07381 788 aaKnown RBP7.48□□□□□ -1.21
TDP1YBR223C ZRT2Q12436 422 aa7.48□□□□□ -1.21
TDP1YBR223C DAL7P21826 554 aa7.47□□□□□ -1.21
TDP1YBR223C TRK2P28584 889 aa7.47□□□□□ -1.21
TDP1YBR223C PTC4P38089 393 aa7.47□□□□□ -1.21
TDP1YBR223C NDT80P38830 627 aa7.47□□□□□ -1.21
TDP1YBR223C UBP5P39944 805 aa7.47□□□□□ -1.21
TDP1YBR223C BTN2P53286 410 aa7.47□□□□□ -1.21
TDP1YBR223C KIN4Q01919 800 aa7.47□□□□□ -1.21
TDP1YBR223C YMR102CQ03177 834 aa7.47□□□□□ -1.21
TDP1YBR223C URH1Q04179 340 aa7.47□□□□□ -1.21
TDP1YBR223C SFH1Q06168 426 aa7.47□□□□□ -1.21
TDP1YBR223C YDL057WQ07379 328 aa7.47□□□□□ -1.21
TDP1YBR223C APL5Q08951 932 aaKnown RBP7.47□□□□□ -1.21
TDP1YBR223C DIP2Q12220 943 aaPredicted RBP7.47□□□□□ -1.21
TDP1YBR223C SCP160P06105 1222 aaKnown RBP RIP-Chip data7.46□□□□□ -1.21not detected
TDP1YBR223C SWI6P09959 803 aa7.46□□□□□ -1.21
TDP1YBR223C MCD4P36051 919 aa7.46□□□□□ -1.21
TDP1YBR223C TDA3P38758 523 aa7.46□□□□□ -1.21
TDP1YBR223C MTC3P53077 123 aa7.46□□□□□ -1.21
TDP1YBR223C MLH2Q07980 695 aa7.46□□□□□ -1.21
TDP1YBR223C SIL1Q08199 421 aa7.46□□□□□ -1.21
TDP1YBR223C YOR223WQ12015 292 aa7.46□□□□□ -1.21
TDP1YBR223C TUB2P02557 457 aaKnown RBP7.45□□□□□ -1.22
TDP1YBR223C SPT21P35209 758 aa7.45□□□□□ -1.22
TDP1YBR223C SPP381P38282 291 aaPredicted RBP7.45□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms