RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 DPEP1P16444 411 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 RFC4P35249 363 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 EIF5P55010 431 aaKnown RBP10.54□□□□□ -0.72
PNKP-229ENST00000637897 USPL1Q5W0Q7 1092 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 DIEXFQ68CQ4 756 aaKnown RBP10.54□□□□□ -0.72
PNKP-229ENST00000637897 ZNF790Q6PG37 636 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 MCM10Q7L590 875 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 VSIG10Q8N0Z9 540 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 GAS2L2Q8NHY3 880 aa10.54□□□□□ -0.72
PNKP-229ENST00000637897 AFDNP55196 1824 aaKnown RBP10.54□□□□□ -0.72
PNKP-229ENST00000637897 HEG1Q9ULI3 1381 aa10.53□□□□□ -0.72
PNKP-229ENST00000637897 NRXN2Q9P2S2 1712 aa10.53□□□□□ -0.72
PNKP-229ENST00000637897 U2AF1L5P0DN76 240 aaPredicted RBP10.53□□□□□ -0.72
PNKP-229ENST00000637897 U2AF1Q01081 240 aaKnown RBP eCLIP10.53□□□□□ -0.72
PNKP-229ENST00000637897 NFIXQ14938 502 aa10.53□□□□□ -0.72
PNKP-229ENST00000637897 COL15A1P39059 1388 aa10.52□□□□□ -0.72
PNKP-229ENST00000637897 GRIN3BO60391 1043 aa10.52□□□□□ -0.73
PNKP-229ENST00000637897 FCHSD2O94868 740 aa10.52□□□□□ -0.73
PNKP-229ENST00000637897 NARFQ9UHQ1 456 aa10.52□□□□□ -0.73
PNKP-229ENST00000637897 USP16Q9Y5T5 823 aa10.52□□□□□ -0.73
PNKP-229ENST00000637897 CARMIL3Q8ND23 1372 aa10.52□□□□□ -0.73
PNKP-229ENST00000637897 DLG5Q8TDM6 1919 aa10.51□□□□□ -0.73
PNKP-229ENST00000637897 A1BGP04217 495 aa10.51□□□□□ -0.73
PNKP-229ENST00000637897 CANXP27824 592 aaKnown RBP10.51□□□□□ -0.73
PNKP-229ENST00000637897 CHRNA5P30532 468 aa10.51□□□□□ -0.73
PNKP-229ENST00000637897 PIP4K2AP48426 406 aaPredicted RBP10.51□□□□□ -0.73
PNKP-229ENST00000637897 C1QTNF8P60827 252 aa10.51□□□□□ -0.73
PNKP-229ENST00000637897 TGFB2P61812 414 aa10.51□□□□□ -0.73
PNKP-229ENST00000637897 ATP10DQ9P241 1426 aa10.5□□□□□ -0.73
PNKP-229ENST00000637897 PRELPP51888 382 aa10.5□□□□□ -0.73
PNKP-229ENST00000637897 CFAP53Q96M91 514 aa10.5□□□□□ -0.73
PNKP-229ENST00000637897 THUMPD2Q9BTF0 503 aaKnown RBP10.5□□□□□ -0.73
PNKP-229ENST00000637897 MIS18AQ9NYP9 233 aa10.5□□□□□ -0.73
PNKP-229ENST00000637897 NBPF26B4DH59 902 aa10.49□□□□□ -0.73
PNKP-229ENST00000637897 TEFQ10587 303 aa10.49□□□□□ -0.73
PNKP-229ENST00000637897 TBC1D9BQ66K14 1250 aa10.49□□□□□ -0.73
PNKP-229ENST00000637897 NBPF10Q6P3W6 841 aaKnown RBP10.49□□□□□ -0.73
PNKP-229ENST00000637897 NBPF15Q8N660 670 aa10.49□□□□□ -0.73
PNKP-229ENST00000637897 PARP3Q9Y6F1 533 aa10.49□□□□□ -0.73
PNKP-229ENST00000637897 ANKRD31Q8N7Z5 1873 aa10.49□□□□□ -0.73
PNKP-229ENST00000637897 SCN7AQ01118 1682 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 BTBD11A6QL63 1104 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 CAMTA2O94983 1202 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 DDX10Q13206 875 aaKnown RBP10.48□□□□□ -0.73
PNKP-229ENST00000637897 TBC1D2BQ9UPU7 963 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 NUDCQ9Y266 331 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 BCS1LQ9Y276 419 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 ARFGEF1Q9Y6D6 1849 aa10.48□□□□□ -0.73
PNKP-229ENST00000637897 KDM3BQ7LBC6 1761 aa10.47□□□□□ -0.73
PNKP-229ENST00000637897 SERPINB2P05120 415 aa10.47□□□□□ -0.73
PNKP-229ENST00000637897 TTC5Q8N0Z6 440 aa10.47□□□□□ -0.73
PNKP-229ENST00000637897 CCDC24Q8N4L8 307 aa10.47□□□□□ -0.73
PNKP-229ENST00000637897 FMNL2Q96PY5 1086 aa10.47□□□□□ -0.73
PNKP-229ENST00000637897 BCORQ6W2J9 1755 aa10.47□□□□□ -0.73
PNKP-229ENST00000637897 HTATSF1O43719 755 aaKnown RBP10.46□□□□□ -0.73
PNKP-229ENST00000637897 ZPR1O75312 459 aa10.46□□□□□ -0.73
PNKP-229ENST00000637897 STARD3NLO95772 234 aa10.46□□□□□ -0.73
PNKP-229ENST00000637897 IL6STP40189 918 aaPredicted RBP10.46□□□□□ -0.73
PNKP-229ENST00000637897 SBF1O95248 1867 aa10.45□□□□□ -0.74
PNKP-229ENST00000637897 DLEC1Q9Y238 1755 aa10.45□□□□□ -0.74
PNKP-229ENST00000637897 COL11A2P13942 1736 aaPredicted RBP10.45□□□□□ -0.74
PNKP-229ENST00000637897 KIF3CO14782 793 aa10.45□□□□□ -0.74
PNKP-229ENST00000637897 NFE2L2Q16236 605 aa10.45□□□□□ -0.74
PNKP-229ENST00000637897 BICDL1Q6ZP65 573 aa10.45□□□□□ -0.74
PNKP-229ENST00000637897 EIF4A1P60842 406 aaKnown RBP10.44□□□□□ -0.74
PNKP-229ENST00000637897 TAF7Q15545 349 aaPredicted RBP10.44□□□□□ -0.74
PNKP-229ENST00000637897 PRR5LQ6MZQ0 368 aa10.44□□□□□ -0.74
PNKP-229ENST00000637897 LRP10Q7Z4F1 713 aa10.44□□□□□ -0.74
PNKP-229ENST00000637897 TEX13AQ9BXU3 409 aaPredicted RBP10.44□□□□□ -0.74
PNKP-229ENST00000637897 PIM2Q9P1W9 311 aa10.44□□□□□ -0.74
PNKP-229ENST00000637897 GIGYF1O75420 1035 aaPredicted RBP10.43□□□□□ -0.74
PNKP-229ENST00000637897 SNRPA1P09661 255 aaKnown RBP10.43□□□□□ -0.74
PNKP-229ENST00000637897 HLFQ16534 295 aa10.43□□□□□ -0.74
PNKP-229ENST00000637897 ZNF526Q8TF50 670 aaPredicted RBP10.43□□□□□ -0.74
PNKP-229ENST00000637897 RALBP1Q15311 655 aa10.42□□□□□ -0.74
PNKP-229ENST00000637897 DALRD3Q5D0E6 543 aaKnown RBP10.42□□□□□ -0.74
PNKP-229ENST00000637897 ARHGAP27Q6ZUM4 889 aa10.42□□□□□ -0.74
PNKP-229ENST00000637897 RTF1Q92541 710 aaKnown RBP10.42□□□□□ -0.74
PNKP-229ENST00000637897 LAMB4A4D0S4 1761 aa10.42□□□□□ -0.74
PNKP-229ENST00000637897 A0A087WZG4 1122 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 NFKBIEO00221 500 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 TMPOP42166 694 aaKnown RBP10.41□□□□□ -0.74
PNKP-229ENST00000637897 RASSF7Q02833 373 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 PDIA6Q15084 440 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 CCDC184Q52MB2 194 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 C9orf131Q5VYM1 1079 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 SLC51AQ86UW1 340 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 DZIP3Q86Y13 1208 aaKnown RBP10.41□□□□□ -0.74
PNKP-229ENST00000637897 TRIM35Q9UPQ4 493 aa10.41□□□□□ -0.74
PNKP-229ENST00000637897 ZNF330Q9Y3S2 320 aaPredicted RBP10.41□□□□□ -0.74
PNKP-229ENST00000637897 SLX4Q8IY92 1834 aa10.4□□□□□ -0.74
PNKP-229ENST00000637897 MYBBP1AQ9BQG0 1328 aaKnown RBP10.4□□□□□ -0.74
PNKP-229ENST00000637897 KRT24Q2M2I5 525 aa10.4□□□□□ -0.74
PNKP-229ENST00000637897 TTLL7Q6ZT98 887 aa10.4□□□□□ -0.74
PNKP-229ENST00000637897 C2CD5Q86YS7 1000 aa10.4□□□□□ -0.74
PNKP-229ENST00000637897 CCDC146Q8IYE0 955 aa10.4□□□□□ -0.74
PNKP-229ENST00000637897 PRKRIP1Q9H875 184 aaPredicted RBP10.4□□□□□ -0.74
PNKP-229ENST00000637897 NMRK2Q9NPI5 230 aa10.4□□□□□ -0.74
PNKP-229ENST00000637897 RRP7AQ9Y3A4 280 aaKnown RBP10.4□□□□□ -0.74
PNKP-229ENST00000637897 PROSER3Q2NL68 480 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms