RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PCDHB15Q9Y5E8 787 aa25.54■■□□□ 1.68
CLN3-250ENST00000636839 ITGB4P16144 1822 aa25.54■■□□□ 1.68
CLN3-250ENST00000636839 TRPC5Q9UL62 973 aaPredicted RBP25.54■■□□□ 1.68
CLN3-250ENST00000636839 BCL9O00512 1426 aa25.54■■□□□ 1.68
CLN3-250ENST00000636839 ATRNO75882 1429 aa25.54■■□□□ 1.68
CLN3-250ENST00000636839 KCPQ6ZWJ8 1503 aa25.54■■□□□ 1.68
CLN3-250ENST00000636839 SLC4A10Q6U841 1118 aa25.53■■□□□ 1.68
CLN3-250ENST00000636839 DBF4Q9UBU7 674 aaPredicted RBP25.53■■□□□ 1.68
CLN3-250ENST00000636839 DDX19BQ9UMR2 479 aa25.53■■□□□ 1.68
CLN3-250ENST00000636839 KCNQ2O43526 872 aa25.52■■□□□ 1.68
CLN3-250ENST00000636839 ZBTB7BO15156 539 aaPredicted RBP25.51■■□□□ 1.67
CLN3-250ENST00000636839 PAPPAQ13219 1627 aa25.51■■□□□ 1.67
CLN3-250ENST00000636839 DOT1LQ8TEK3 1739 aa25.51■■□□□ 1.67
CLN3-250ENST00000636839 MYL6BP14649 208 aa25.51■■□□□ 1.67
CLN3-250ENST00000636839 IGHDP01880 384 aa25.5■■□□□ 1.67
CLN3-250ENST00000636839 INTS3Q68E01 1043 aaKnown RBP25.5■■□□□ 1.67
CLN3-250ENST00000636839 ZBTB40Q9NUA8 1239 aa25.5■■□□□ 1.67
CLN3-250ENST00000636839 RBM42Q9BTD8 480 aaKnown RBP25.49■■□□□ 1.67
CLN3-250ENST00000636839 UBR2Q8IWV8 1755 aa25.49■■□□□ 1.67
CLN3-250ENST00000636839 PTF1AQ7RTS3 328 aa25.49■■□□□ 1.67
CLN3-250ENST00000636839 DDX21Q9NR30 783 aaKnown RBP eCLIP25.49■■□□□ 1.67
CLN3-250ENST00000636839 SLC4A9Q96Q91 983 aa25.48■■□□□ 1.67
CLN3-250ENST00000636839 AIMP1Q12904 312 aaKnown RBP25.47■■□□□ 1.67
CLN3-250ENST00000636839 C1orf115Q9H7X2 142 aa25.47■■□□□ 1.67
CLN3-250ENST00000636839 THSD7AQ9UPZ6 1657 aa25.47■■□□□ 1.67
CLN3-250ENST00000636839 SEPT12Q8IYM1 358 aa25.47■■□□□ 1.67
CLN3-250ENST00000636839 PI4KAP2A4QPH2 592 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 ONECUT3O60422 494 aaPredicted RBP25.46■■□□□ 1.67
CLN3-250ENST00000636839 PI4KAP1Q8N8J0 262 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 CHMP4AQ9BY43 222 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 CACNA1FO60840 1977 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 NBPF26B4DH59 902 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 A1BGP04217 495 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 NBPF14Q5TI25 921 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 NBPF10Q6P3W6 841 aaKnown RBP25.46■■□□□ 1.67
CLN3-250ENST00000636839 SKAP1Q86WV1 359 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 NBPF15Q8N660 670 aa25.46■■□□□ 1.67
CLN3-250ENST00000636839 LRP10Q7Z4F1 713 aa25.45■■□□□ 1.66
CLN3-250ENST00000636839 DNAJC10Q8IXB1 793 aa25.45■■□□□ 1.66
CLN3-250ENST00000636839 HYPKQ9NX55 129 aa25.45■■□□□ 1.66
CLN3-250ENST00000636839 KDM2BQ8NHM5 1336 aa25.45■■□□□ 1.66
CLN3-250ENST00000636839 ADCY9O60503 1353 aa25.44■■□□□ 1.66
CLN3-250ENST00000636839 XAGE3Q8WTP9 111 aa25.42■■□□□ 1.66
CLN3-250ENST00000636839 MEIS3Q99687 375 aa25.42■■□□□ 1.66
CLN3-250ENST00000636839 COPS6Q7L5N1 327 aa25.42■■□□□ 1.66
CLN3-250ENST00000636839 AAMPQ13685 434 aa25.41■■□□□ 1.66
CLN3-250ENST00000636839 FBXO41Q8TF61 875 aa25.41■■□□□ 1.66
CLN3-250ENST00000636839 MAP3K2Q9Y2U5 619 aa25.41■■□□□ 1.66
CLN3-250ENST00000636839 CCT4P50991 539 aaKnown RBP25.4■■□□□ 1.66
CLN3-250ENST00000636839 DNAAF4Q8WXU2 420 aa25.39■■□□□ 1.66
CLN3-250ENST00000636839 KSR2Q6VAB6 950 aa25.38■■□□□ 1.65
CLN3-250ENST00000636839 VSIG10Q8N0Z9 540 aa25.38■■□□□ 1.65
CLN3-250ENST00000636839 LAMB4A4D0S4 1761 aa25.37■■□□□ 1.65
CLN3-250ENST00000636839 BEND3Q5T5X7 828 aa25.37■■□□□ 1.65
CLN3-250ENST00000636839 CENPQQ7L2Z9 268 aaPredicted RBP25.37■■□□□ 1.65
CLN3-250ENST00000636839 SIRT2Q8IXJ6 389 aa25.35■■□□□ 1.65
CLN3-250ENST00000636839 TTLL7Q6ZT98 887 aa25.34■■□□□ 1.65
CLN3-250ENST00000636839 EP400Q96L91 3159 aa25.34■■□□□ 1.65
CLN3-250ENST00000636839 CYP19A1P11511 503 aaPredicted RBP25.34■■□□□ 1.65
CLN3-250ENST00000636839 KCNQ4P56696 695 aa25.34■■□□□ 1.65
CLN3-250ENST00000636839 ZNF772Q68DY9 489 aaPredicted RBP25.34■■□□□ 1.65
CLN3-250ENST00000636839 RIC3Q7Z5B4 369 aa25.34■■□□□ 1.65
CLN3-250ENST00000636839 SRCIN1Q9C0H9 1055 aa25.34■■□□□ 1.65
CLN3-250ENST00000636839 USP44Q9H0E7 712 aa25.34■■□□□ 1.65
CLN3-250ENST00000636839 PALLDQ8WX93 1383 aa25.33■■□□□ 1.65
CLN3-250ENST00000636839 LOC102724428A0A0B4J2F2 783 aa25.33■■□□□ 1.65
CLN3-250ENST00000636839 SIK1P57059 783 aa25.33■■□□□ 1.65
CLN3-250ENST00000636839 CWF19L2Q2TBE0 894 aaKnown RBP25.33■■□□□ 1.65
CLN3-250ENST00000636839 ZNF330Q9Y3S2 320 aaPredicted RBP25.33■■□□□ 1.65
CLN3-250ENST00000636839 ANKRD13DQ6ZTN6 518 aa25.32■■□□□ 1.64
CLN3-250ENST00000636839 TEX13AQ9BXU3 409 aaPredicted RBP25.32■■□□□ 1.64
CLN3-250ENST00000636839 STARD3NLO95772 234 aa25.32■■□□□ 1.64
CLN3-250ENST00000636839 DDX58O95786 925 aaKnown RBP25.32■■□□□ 1.64
CLN3-250ENST00000636839 ATP6V1AP38606 617 aa25.32■■□□□ 1.64
CLN3-250ENST00000636839 ITPK1Q13572 414 aa25.32■■□□□ 1.64
CLN3-250ENST00000636839 CHMP4BQ9H444 224 aaKnown RBP25.32■■□□□ 1.64
CLN3-250ENST00000636839 RWDD1Q9H446 243 aaPredicted RBP25.32■■□□□ 1.64
CLN3-250ENST00000636839 RGS17Q9UGC6 210 aaPredicted RBP25.32■■□□□ 1.64
CLN3-250ENST00000636839 ERBB4Q15303 1308 aa25.31■■□□□ 1.64
CLN3-250ENST00000636839 PXDNLA1KZ92 1463 aa25.31■■□□□ 1.64
CLN3-250ENST00000636839 RBM6P78332 1123 aaKnown RBP25.3■■□□□ 1.64
CLN3-250ENST00000636839 HDAC1Q13547 482 aaPredicted RBP25.29■■□□□ 1.64
CLN3-250ENST00000636839 ZBTB1Q9Y2K1 713 aa25.29■■□□□ 1.64
CLN3-250ENST00000636839 IGKV5-2P06315 115 aa25.29■■□□□ 1.64
CLN3-250ENST00000636839 NBPF7P0C2Y1 421 aaPredicted RBP25.29■■□□□ 1.64
CLN3-250ENST00000636839 MYD88Q99836 296 aa25.28■■□□□ 1.64
CLN3-250ENST00000636839 TJP1Q07157 1748 aa25.28■■□□□ 1.64
CLN3-250ENST00000636839 KRT27Q7Z3Y8 459 aa25.27■■□□□ 1.64
CLN3-250ENST00000636839 SMARCC1Q92922 1105 aaPredicted RBP25.27■■□□□ 1.64
CLN3-250ENST00000636839 METTL22Q9BUU2 404 aaPredicted RBP25.27■■□□□ 1.64
CLN3-250ENST00000636839 ZBTB3Q9H5J0 574 aa25.27■■□□□ 1.64
CLN3-250ENST00000636839 ATP10DQ9P241 1426 aa25.27■■□□□ 1.64
CLN3-250ENST00000636839 BRWD3Q6RI45 1802 aa25.26■■□□□ 1.63
CLN3-250ENST00000636839 CEP85Q6P2H3 762 aa25.26■■□□□ 1.63
CLN3-250ENST00000636839 ATP5J2-PTCD1G3V325 749 aa25.25■■□□□ 1.63
CLN3-250ENST00000636839 PLBD2Q8NHP8 589 aa25.25■■□□□ 1.63
CLN3-250ENST00000636839 INTS5Q6P9B9 1019 aaKnown RBP25.25■■□□□ 1.63
CLN3-250ENST00000636839 LINS1Q8NG48 757 aa25.25■■□□□ 1.63
CLN3-250ENST00000636839 ARXQ96QS3 562 aa25.25■■□□□ 1.63
CLN3-250ENST00000636839 LRRFIP2Q9Y608 721 aaKnown RBP25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms