RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 MYH16Q9H6N6 1097 aa24.8■■□□□ 1.56
SQSTM1-216ENST00000626660 CCDC87Q9NVE4 849 aa24.8■■□□□ 1.56
SQSTM1-216ENST00000626660 QSER1Q2KHR3 1735 aa24.8■■□□□ 1.56
SQSTM1-216ENST00000626660 TUBGCP6Q96RT7 1819 aa24.79■■□□□ 1.56
SQSTM1-216ENST00000626660 UBR3Q6ZT12 1888 aa24.79■■□□□ 1.56
SQSTM1-216ENST00000626660 GOLGA2Q08379 1002 aa24.79■■□□□ 1.56
SQSTM1-216ENST00000626660 FLAD1Q8NFF5 587 aa24.78■■□□□ 1.56
SQSTM1-216ENST00000626660 RTCBQ9Y3I0 505 aaKnown RBP24.78■■□□□ 1.56
SQSTM1-216ENST00000626660 PRAMEF22A3QJZ6 481 aa24.77■■□□□ 1.56
SQSTM1-216ENST00000626660 TSR2Q969E8 191 aaKnown RBP24.77■■□□□ 1.56
SQSTM1-216ENST00000626660 USP16Q9Y5T5 823 aa24.77■■□□□ 1.56
SQSTM1-216ENST00000626660 RPS6KA4O75676 772 aa24.76■■□□□ 1.55
SQSTM1-216ENST00000626660 INTS5Q6P9B9 1019 aaKnown RBP24.76■■□□□ 1.55
SQSTM1-216ENST00000626660 SSFA2P28290 1259 aa24.75■■□□□ 1.55
SQSTM1-216ENST00000626660 FANCIQ9NVI1 1328 aa24.75■■□□□ 1.55
SQSTM1-216ENST00000626660 E9PSI1 815 aa24.74■■□□□ 1.55
SQSTM1-216ENST00000626660 PHF14O94880 888 aa24.74■■□□□ 1.55
SQSTM1-216ENST00000626660 HOXB7P09629 217 aa24.74■■□□□ 1.55
SQSTM1-216ENST00000626660 KRT24Q2M2I5 525 aa24.74■■□□□ 1.55
SQSTM1-216ENST00000626660 ZBTB1Q9Y2K1 713 aa24.74■■□□□ 1.55
SQSTM1-216ENST00000626660 PNPLA7Q6ZV29 1317 aa24.74■■□□□ 1.55
SQSTM1-216ENST00000626660 MSH5O43196 834 aa24.73■■□□□ 1.55
SQSTM1-216ENST00000626660 CANXP27824 592 aaKnown RBP24.73■■□□□ 1.55
SQSTM1-216ENST00000626660 DUSP27Q5VZP5 1158 aa24.73■■□□□ 1.55
SQSTM1-216ENST00000626660 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.72■■□□□ 1.55
SQSTM1-216ENST00000626660 A1BGP04217 495 aa24.72■■□□□ 1.55
SQSTM1-216ENST00000626660 ADRA2BP18089 450 aa24.72■■□□□ 1.55
SQSTM1-216ENST00000626660 NPM2Q86SE8 214 aaKnown RBP24.72■■□□□ 1.55
SQSTM1-216ENST00000626660 SPINK5Q9NQ38 1064 aaPredicted RBP24.72■■□□□ 1.55
SQSTM1-216ENST00000626660 SOS1Q07889 1333 aaPredicted RBP24.71■■□□□ 1.55
SQSTM1-216ENST00000626660 EIF2S2P20042 333 aaKnown RBP24.71■■□□□ 1.55
SQSTM1-216ENST00000626660 TRAPPC3LQ5T215 181 aa24.71■■□□□ 1.55
SQSTM1-216ENST00000626660 COL23A1Q86Y22 540 aaPredicted RBP24.7■■□□□ 1.54
SQSTM1-216ENST00000626660 C8orf58Q8NAV2 365 aa24.7■■□□□ 1.54
SQSTM1-216ENST00000626660 CHMP4AQ9BY43 222 aa24.7■■□□□ 1.54
SQSTM1-216ENST00000626660 CASZ1Q86V15 1759 aa24.7■■□□□ 1.54
SQSTM1-216ENST00000626660 ERBB4Q15303 1308 aa24.69■■□□□ 1.54
SQSTM1-216ENST00000626660 ELL2O00472 640 aaPredicted RBP24.69■■□□□ 1.54
SQSTM1-216ENST00000626660 IL6STP40189 918 aaPredicted RBP24.69■■□□□ 1.54
SQSTM1-216ENST00000626660 SLFN5Q08AF3 891 aa24.69■■□□□ 1.54
SQSTM1-216ENST00000626660 ZNF330Q9Y3S2 320 aaPredicted RBP24.69■■□□□ 1.54
SQSTM1-216ENST00000626660 ZBED9Q6R2W3 1325 aa24.68■■□□□ 1.54
SQSTM1-216ENST00000626660 HDGFL1Q5TGJ6 251 aa24.68■■□□□ 1.54
SQSTM1-216ENST00000626660 SMIM5Q71RC9 77 aa24.68■■□□□ 1.54
SQSTM1-216ENST00000626660 AMIGO3Q86WK7 504 aa24.68■■□□□ 1.54
SQSTM1-216ENST00000626660 COL15A1P39059 1388 aa24.67■■□□□ 1.54
SQSTM1-216ENST00000626660 A0A087WZG4 1122 aa24.67■■□□□ 1.54
SQSTM1-216ENST00000626660 RFC4P35249 363 aa24.67■■□□□ 1.54
SQSTM1-216ENST00000626660 SLC16A10Q8TF71 515 aa24.67■■□□□ 1.54
SQSTM1-216ENST00000626660 NECTIN2Q92692 538 aa24.67■■□□□ 1.54
SQSTM1-216ENST00000626660 DCAF8L1A6NGE4 600 aa24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 PIP4K2AP48426 406 aaPredicted RBP24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 EIF5P55010 431 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 EXOSC9Q06265 439 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 TWISTNBQ3B726 338 aaPredicted RBP24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 ARHGEF1Q92888 912 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 CDCA7LQ96GN5 454 aa24.66■■□□□ 1.54
SQSTM1-216ENST00000626660 NBPF26B4DH59 902 aa24.65■■□□□ 1.54
SQSTM1-216ENST00000626660 C4AP0C0L4 1744 aa24.65■■□□□ 1.54
SQSTM1-216ENST00000626660 NBPF10Q6P3W6 841 aaKnown RBP24.65■■□□□ 1.54
SQSTM1-216ENST00000626660 NBPF15Q8N660 670 aa24.65■■□□□ 1.54
SQSTM1-216ENST00000626660 PDGFDQ9GZP0 370 aaPredicted RBP24.65■■□□□ 1.54
SQSTM1-216ENST00000626660 PPP1R1BQ9UD71 204 aaPredicted RBP24.65■■□□□ 1.54
SQSTM1-216ENST00000626660 TSPYL6Q8N831 410 aa24.64■■□□□ 1.54
SQSTM1-216ENST00000626660 MYL6BP14649 208 aa24.63■■□□□ 1.53
SQSTM1-216ENST00000626660 ARXQ96QS3 562 aa24.63■■□□□ 1.53
SQSTM1-216ENST00000626660 ZPR1O75312 459 aa24.62■■□□□ 1.53
SQSTM1-216ENST00000626660 CCDC30Q5VVM6 783 aa24.62■■□□□ 1.53
SQSTM1-216ENST00000626660 DBF4Q9UBU7 674 aaPredicted RBP24.62■■□□□ 1.53
SQSTM1-216ENST00000626660 ZBTB7AO95365 584 aa24.61■■□□□ 1.53
SQSTM1-216ENST00000626660 YY1P25490 414 aa24.61■■□□□ 1.53
SQSTM1-216ENST00000626660 MTFR1LQ9H019 292 aa24.61■■□□□ 1.53
SQSTM1-216ENST00000626660 DDX21Q9NR30 783 aaKnown RBP eCLIP24.61■■□□□ 1.53
SQSTM1-216ENST00000626660 TRMT2AQ8IZ69 625 aaKnown RBP24.6■■□□□ 1.53
SQSTM1-216ENST00000626660 CHPF2Q9P2E5 772 aa24.6■■□□□ 1.53
SQSTM1-216ENST00000626660 NARFQ9UHQ1 456 aa24.6■■□□□ 1.53
SQSTM1-216ENST00000626660 USP42Q9H9J4 1324 aaKnown RBP24.6■■□□□ 1.53
SQSTM1-216ENST00000626660 PDIA6Q15084 440 aa24.59■■□□□ 1.53
SQSTM1-216ENST00000626660 DZIP3Q86Y13 1208 aaKnown RBP24.59■■□□□ 1.53
SQSTM1-216ENST00000626660 STK31Q9BXU1 1019 aa24.59■■□□□ 1.53
SQSTM1-216ENST00000626660 VAMP4O75379 141 aa24.58■■□□□ 1.53
SQSTM1-216ENST00000626660 SPON1Q9HCB6 807 aa24.58■■□□□ 1.53
SQSTM1-216ENST00000626660 HYPKQ9NX55 129 aa24.58■■□□□ 1.53
SQSTM1-216ENST00000626660 SRP68Q9UHB9 627 aaKnown RBP24.58■■□□□ 1.53
SQSTM1-216ENST00000626660 TBC1D2BQ9UPU7 963 aa24.58■■□□□ 1.53
SQSTM1-216ENST00000626660 CACNA1FO60840 1977 aa24.57■■□□□ 1.52
SQSTM1-216ENST00000626660 ANXA1P04083 346 aa24.57■■□□□ 1.52
SQSTM1-216ENST00000626660 PROSER3Q2NL68 480 aa24.57■■□□□ 1.52
SQSTM1-216ENST00000626660 ATF5Q9Y2D1 282 aaPredicted RBP24.57■■□□□ 1.52
SQSTM1-216ENST00000626660 USPL1Q5W0Q7 1092 aa24.56■■□□□ 1.52
SQSTM1-216ENST00000626660 MSL1Q68DK7 614 aa24.56■■□□□ 1.52
SQSTM1-216ENST00000626660 KIF6Q6ZMV9 814 aa24.56■■□□□ 1.52
SQSTM1-216ENST00000626660 NLGN1Q8N2Q7 840 aa24.56■■□□□ 1.52
SQSTM1-216ENST00000626660 GYS1P13807 737 aa24.55■■□□□ 1.52
SQSTM1-216ENST00000626660 SCN7AQ01118 1682 aa24.55■■□□□ 1.52
SQSTM1-216ENST00000626660 POLD1P28340 1107 aa24.54■■□□□ 1.52
SQSTM1-216ENST00000626660 YTHDC1Q96MU7 727 aaKnown RBP24.54■■□□□ 1.52
SQSTM1-216ENST00000626660 BCORQ6W2J9 1755 aa24.54■■□□□ 1.52
SQSTM1-216ENST00000626660 CAMTA2O94983 1202 aa24.53■■□□□ 1.52
SQSTM1-216ENST00000626660 AIMP1Q12904 312 aaKnown RBP24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms