RNA–Protein interactions for RNA: ENST00000624009.3

LINC00963-217, long intergenic non-protein coding RNA 963, humanhuman

TSL 5 BASIC

Gene LINC00963, Length 663 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-217ENST00000624009 ZNF316A6NFI3 1004 aaPredicted RBP16.44■□□□□ 0.22
LINC00963-217ENST00000624009 SMIM5Q71RC9 77 aa16.44■□□□□ 0.22
LINC00963-217ENST00000624009 A0A087WZG4 1122 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 MMP10P09238 476 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 EIF5P55010 431 aaKnown RBP16.43■□□□□ 0.22
LINC00963-217ENST00000624009 LMOD3Q0VAK6 560 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 BABAM1Q9NWV8 329 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 NARFQ9UHQ1 456 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 ZBTB1Q9Y2K1 713 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 LAMB4A4D0S4 1761 aa16.43■□□□□ 0.22
LINC00963-217ENST00000624009 ZPR1O75312 459 aa16.42■□□□□ 0.22
LINC00963-217ENST00000624009 SNRPA1P09661 255 aaKnown RBP16.42■□□□□ 0.22
LINC00963-217ENST00000624009 IL6STP40189 918 aaPredicted RBP16.42■□□□□ 0.22
LINC00963-217ENST00000624009 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
LINC00963-217ENST00000624009 C10orf71Q711Q0 1435 aa16.41■□□□□ 0.22
LINC00963-217ENST00000624009 SCN7AQ01118 1682 aa16.4■□□□□ 0.22
LINC00963-217ENST00000624009 BRCA1P38398 1863 aaKnown RBP16.4■□□□□ 0.22
LINC00963-217ENST00000624009 RGL2O15211 777 aa16.4■□□□□ 0.22
LINC00963-217ENST00000624009 DCTN1Q14203 1278 aa16.4■□□□□ 0.22
LINC00963-217ENST00000624009 KLHL34Q8N239 644 aa16.4■□□□□ 0.22
LINC00963-217ENST00000624009 NLGN2Q8NFZ4 835 aa16.4■□□□□ 0.22
LINC00963-217ENST00000624009 RUNDC1Q96C34 613 aa16.4■□□□□ 0.22
LINC00963-217ENST00000624009 KIAA1551Q9HCM1 1747 aa16.39■□□□□ 0.21
LINC00963-217ENST00000624009 NRXN2Q9P2S2 1712 aa16.39■□□□□ 0.21
LINC00963-217ENST00000624009 GRIN3BO60391 1043 aa16.39■□□□□ 0.21
LINC00963-217ENST00000624009 TMPOP42166 694 aaKnown RBP16.39■□□□□ 0.21
LINC00963-217ENST00000624009 TGFB2P61812 414 aa16.39■□□□□ 0.21
LINC00963-217ENST00000624009 PARP3Q9Y6F1 533 aa16.39■□□□□ 0.21
LINC00963-217ENST00000624009 AFDNP55196 1824 aaKnown RBP16.39■□□□□ 0.21
LINC00963-217ENST00000624009 KCNQ3O43525 872 aa16.38■□□□□ 0.21
LINC00963-217ENST00000624009 TM4SF1P30408 202 aa16.38■□□□□ 0.21
LINC00963-217ENST00000624009 RIPK4P57078 832 aa16.38■□□□□ 0.21
LINC00963-217ENST00000624009 GPR162Q16538 588 aa16.38■□□□□ 0.21
LINC00963-217ENST00000624009 BCORQ6W2J9 1755 aa16.38■□□□□ 0.21
LINC00963-217ENST00000624009 FKBP8Q14318 412 aa16.37■□□□□ 0.21
LINC00963-217ENST00000624009 USPL1Q5W0Q7 1092 aa16.37■□□□□ 0.21
LINC00963-217ENST00000624009 NPM2Q86SE8 214 aaKnown RBP16.37■□□□□ 0.21
LINC00963-217ENST00000624009 SRP68Q9UHB9 627 aaKnown RBP16.37■□□□□ 0.21
LINC00963-217ENST00000624009 ADAMTS8Q9UP79 889 aa16.37■□□□□ 0.21
LINC00963-217ENST00000624009 CANXP27824 592 aaKnown RBP16.36■□□□□ 0.21
LINC00963-217ENST00000624009 POLRMTO00411 1230 aaKnown RBP16.35■□□□□ 0.21
LINC00963-217ENST00000624009 YY1P25490 414 aa16.35■□□□□ 0.21
LINC00963-217ENST00000624009 EIF4A1P60842 406 aaKnown RBP16.35■□□□□ 0.21
LINC00963-217ENST00000624009 USP16Q9Y5T5 823 aa16.35■□□□□ 0.21
LINC00963-217ENST00000624009 N4BP2Q86UW6 1770 aaPredicted RBP16.35■□□□□ 0.21
LINC00963-217ENST00000624009 ARFGEF1Q9Y6D6 1849 aa16.35■□□□□ 0.21
LINC00963-217ENST00000624009 PXDNLA1KZ92 1463 aa16.35■□□□□ 0.21
LINC00963-217ENST00000624009 GIGYF1O75420 1035 aaPredicted RBP16.34■□□□□ 0.21
LINC00963-217ENST00000624009 DDR1Q08345 913 aa16.34■□□□□ 0.21
LINC00963-217ENST00000624009 CLEC4GQ6UXB4 293 aa16.34■□□□□ 0.21
LINC00963-217ENST00000624009 A1BGP04217 495 aa16.33■□□□□ 0.2
LINC00963-217ENST00000624009 BCL2L12Q9HB09 334 aa16.33■□□□□ 0.2
LINC00963-217ENST00000624009 ERBB4Q15303 1308 aa16.33■□□□□ 0.2
LINC00963-217ENST00000624009 YBX3P16989 372 aaKnown RBP eCLIP16.32■□□□□ 0.2
LINC00963-217ENST00000624009 NFIXQ14938 502 aa16.32■□□□□ 0.2
LINC00963-217ENST00000624009 THUMPD2Q9BTF0 503 aaKnown RBP16.32■□□□□ 0.2
LINC00963-217ENST00000624009 DLEC1Q9Y238 1755 aa16.32■□□□□ 0.2
LINC00963-217ENST00000624009 ANP32CO43423 234 aa16.31■□□□□ 0.2
LINC00963-217ENST00000624009 CCDC146Q8IYE0 955 aa16.31■□□□□ 0.2
LINC00963-217ENST00000624009 MIS18AQ9NYP9 233 aa16.31■□□□□ 0.2
LINC00963-217ENST00000624009 TSPYL4Q9UJ04 414 aa16.31■□□□□ 0.2
LINC00963-217ENST00000624009 CARMIL3Q8ND23 1372 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 PRAMEF22A3QJZ6 481 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 CHL1O00533 1208 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 CAMTA2O94983 1202 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 NCBP3Q53F19 620 aaKnown RBP16.3■□□□□ 0.2
LINC00963-217ENST00000624009 TRIM35Q9UPQ4 493 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 PDZRN3Q9UPQ7 1066 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 NUP98P52948 1817 aa16.3■□□□□ 0.2
LINC00963-217ENST00000624009 NBPF26B4DH59 902 aa16.29■□□□□ 0.2
LINC00963-217ENST00000624009 NBPF10Q6P3W6 841 aaKnown RBP16.29■□□□□ 0.2
LINC00963-217ENST00000624009 DZIP3Q86Y13 1208 aaKnown RBP16.29■□□□□ 0.2
LINC00963-217ENST00000624009 NBPF15Q8N660 670 aa16.29■□□□□ 0.2
LINC00963-217ENST00000624009 TBC1D2BQ9UPU7 963 aa16.29■□□□□ 0.2
LINC00963-217ENST00000624009 ZNF652Q9Y2D9 606 aa16.29■□□□□ 0.2
LINC00963-217ENST00000624009 SERPINB2P05120 415 aa16.28■□□□□ 0.2
LINC00963-217ENST00000624009 CALD1Q05682 793 aaKnown RBP16.28■□□□□ 0.2
LINC00963-217ENST00000624009 PELP1Q8IZL8 1130 aaKnown RBP16.28■□□□□ 0.2
LINC00963-217ENST00000624009 HOXB7P09629 217 aa16.27■□□□□ 0.2
LINC00963-217ENST00000624009 CFAP44Q96MT7 982 aa16.27■□□□□ 0.2
LINC00963-217ENST00000624009 RRP7AQ9Y3A4 280 aaKnown RBP16.27■□□□□ 0.2
LINC00963-217ENST00000624009 ZNF330Q9Y3S2 320 aaPredicted RBP16.27■□□□□ 0.2
LINC00963-217ENST00000624009 ANKRD31Q8N7Z5 1873 aa16.27■□□□□ 0.19
LINC00963-217ENST00000624009 ERVV-1B6SEH8 477 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 DPEP1P16444 411 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 KCNA3P22001 575 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 NEUROD2Q15784 382 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 TBC1D9BQ66K14 1250 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 SETDB2Q96T68 719 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 PIM2Q9P1W9 311 aa16.26■□□□□ 0.19
LINC00963-217ENST00000624009 A0A0G2JLW4 131 aa16.25■□□□□ 0.19
LINC00963-217ENST00000624009 APAF1O14727 1248 aa16.24■□□□□ 0.19
LINC00963-217ENST00000624009 ZNF853P0CG23 659 aa16.24■□□□□ 0.19
LINC00963-217ENST00000624009 CCDC27Q2M243 656 aa16.24■□□□□ 0.19
LINC00963-217ENST00000624009 BRIP1Q9BX63 1249 aa16.24■□□□□ 0.19
LINC00963-217ENST00000624009 ATP10DQ9P241 1426 aa16.23■□□□□ 0.19
LINC00963-217ENST00000624009 IFT57Q9NWB7 429 aa16.23■□□□□ 0.19
LINC00963-217ENST00000624009 CACNA1FO60840 1977 aa16.22■□□□□ 0.19
LINC00963-217ENST00000624009 PDE6BP35913 854 aa16.22■□□□□ 0.19
LINC00963-217ENST00000624009 PIP4K2AP48426 406 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms