RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 LGR6Q9HBX8 967 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 RBM27Q9P2N5 1060 aaKnown RBP10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 A0A087WZG4 1122 aa10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 GDPD2Q9HCC8 539 aa10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 CAMK4Q16566 473 aa10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 LARP1BQ659C4 914 aaKnown RBP10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 NOL10Q9BSC4 688 aaKnown RBP10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 CAMSAP1Q5T5Y3 1602 aa10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 AKAP4Q5JQC9 854 aa10.65□□□□□ -0.7
PDLIM5-222ENST00000615540 PDE1AP54750 535 aa10.65□□□□□ -0.71
PDLIM5-222ENST00000615540 TPD52L1Q16890 204 aaPredicted RBP10.65□□□□□ -0.71
PDLIM5-222ENST00000615540 BLOC1S2Q6QNY1 142 aa10.65□□□□□ -0.71
PDLIM5-222ENST00000615540 FMNL2Q96PY5 1086 aa10.65□□□□□ -0.71
PDLIM5-222ENST00000615540 DHX16O60231 1041 aaKnown RBP10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 ATP2B1P20020 1258 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 FERMT3Q86UX7 667 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 PLEKHM2Q8IWE5 1019 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 IFNL2Q8IZJ0 200 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 XAGE3Q8WTP9 111 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 WDR33Q9C0J8 1336 aaKnown RBP10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 UBE3BQ7Z3V4 1068 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 NFATC2IPQ8NCF5 419 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 GLRX3O76003 335 aaKnown RBP10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 ABCA9Q8IUA7 1624 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 RHPN1Q8TCX5 695 aa10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 POLR1AO95602 1720 aaPredicted RBP10.64□□□□□ -0.71
PDLIM5-222ENST00000615540 DTNBO60941 627 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 METTL24Q5JXM2 366 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 CCDC73Q6ZRK6 1079 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 SBNO1A3KN83 1393 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 MARCH6O60337 910 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 IDH1O75874 414 aaKnown RBP10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 USP19O94966 1318 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 ATP8B2P98198 1209 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 AMOTL1Q8IY63 956 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 R3HCC1Q9Y3T6 440 aaKnown RBP10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 ROBO2Q9HCK4 1378 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 CPLX2Q6PUV4 134 aaKnown RBP10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 RAB11FIP4Q86YS3 637 aa10.63□□□□□ -0.71
PDLIM5-222ENST00000615540 RNMTO43148 476 aaKnown RBP10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 COPS6Q7L5N1 327 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 FAM43AQ8N2R8 423 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 GCP02774 474 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 MPHOSPH8Q99549 860 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 FAM135BQ49AJ0 1406 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 SAMD1Q6SPF0 538 aaPredicted RBP10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 TRMT2AQ8IZ69 625 aaKnown RBP10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 SNRKQ9NRH2 765 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 INSRP06213 1382 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 GOLIM4O00461 696 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 PIBF1Q8WXW3 757 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 CEP126Q9P2H0 1117 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 STARD3NLO95772 234 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 GUCY1B3Q02153 619 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 NUP133Q8WUM0 1156 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 CCDC39Q9UFE4 941 aa10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 CIZ1Q9ULV3 898 aaPredicted RBP10.62□□□□□ -0.71
PDLIM5-222ENST00000615540 IFIT1P09914 478 aaKnown RBP10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 ADGRB3O60242 1522 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 ZNF521Q96K83 1311 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 CCDC173Q0VFZ6 552 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 ACSBG1Q96GR2 724 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 DCTPP1Q9H773 170 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 IP6K1Q92551 441 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 ESYT1Q9BSJ8 1104 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 MBD3O95983 291 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 NBPF6Q5VWK0 638 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 NBPF4Q96M43 638 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 WWC3Q9ULE0 1092 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 GJB2P29033 226 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 ANKRD1Q15327 319 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 SMC5Q8IY18 1101 aa10.61□□□□□ -0.71
PDLIM5-222ENST00000615540 KCNQ3O43525 872 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 SPATA32Q96LK8 384 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 TCEANC2Q96MN5 208 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 BICC1Q9H694 974 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 CLTCQ00610 1675 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 SNRPA1P09661 255 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 HSP90AB3PQ58FF7 597 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 KLHL34Q8N239 644 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 EVI5LQ96CN4 794 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 CCT2P78371 535 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 NECAB1Q8N987 351 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 ECHDC1Q9NTX5 307 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 TRMT112Q9UI30 125 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 INO80Q9ULG1 1556 aaPredicted RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 ANKRD13DQ6ZTN6 518 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 DDX46Q7L014 1031 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 TNMDQ9H2S6 317 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 ALKQ9UM73 1620 aa10.6□□□□□ -0.71
PDLIM5-222ENST00000615540 ARHGEF10O15013 1369 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 CCDC69A6NI79 296 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 SLC4A8Q2Y0W8 1093 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 TMX3Q96JJ7 454 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 TRIM34Q9BYJ4 488 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 CWC25Q9NXE8 425 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 FAM13BQ9NYF5 915 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 LRRC2Q9BYS8 371 aa10.59□□□□□ -0.71
PDLIM5-222ENST00000615540 TBX22Q9Y458 520 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms