RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 HMMRO75330 724 aa18.11■□□□□ 0.49
CDH1-213ENST00000612417 ZCRB1Q8TBF4 217 aaKnown RBP18.11■□□□□ 0.49
CDH1-213ENST00000612417 TNPO1Q92973 898 aaKnown RBP18.1■□□□□ 0.49
CDH1-213ENST00000612417 PKD1L3Q7Z443 1732 aa18.1■□□□□ 0.49
CDH1-213ENST00000612417 PLEKHG2Q9H7P9 1386 aa18.1■□□□□ 0.49
CDH1-213ENST00000612417 IL2RBP14784 551 aa18.1■□□□□ 0.49
CDH1-213ENST00000612417 RABEP1Q15276 862 aa18.1■□□□□ 0.49
CDH1-213ENST00000612417 C16orf71Q8IYS4 520 aaPredicted RBP18.1■□□□□ 0.49
CDH1-213ENST00000612417 DCAF5Q96JK2 942 aa18.1■□□□□ 0.49
CDH1-213ENST00000612417 PARP4Q9UKK3 1724 aaKnown RBP18.09■□□□□ 0.49
CDH1-213ENST00000612417 NFATC2IPQ8NCF5 419 aa18.09■□□□□ 0.49
CDH1-213ENST00000612417 GBP4Q96PP9 640 aa18.09■□□□□ 0.49
CDH1-213ENST00000612417 SLC52A2Q9HAB3 445 aa18.09■□□□□ 0.49
CDH1-213ENST00000612417 KDM6AO15550 1401 aaPredicted RBP18.09■□□□□ 0.49
CDH1-213ENST00000612417 SIPA1L3O60292 1781 aaPredicted RBP18.09■□□□□ 0.49
CDH1-213ENST00000612417 GOLGA6L3A6NEY3 463 aa18.08■□□□□ 0.49
CDH1-213ENST00000612417 UBAP1LF5GYI3 381 aa18.08■□□□□ 0.49
CDH1-213ENST00000612417 PTMSP20962 102 aa18.08■□□□□ 0.49
CDH1-213ENST00000612417 OTUD7AQ8TE49 926 aaPredicted RBP18.08■□□□□ 0.49
CDH1-213ENST00000612417 USP26Q9BXU7 913 aa18.08■□□□□ 0.49
CDH1-213ENST00000612417 OSBPL3Q9H4L5 887 aa18.08■□□□□ 0.49
CDH1-213ENST00000612417 SDSP20132 328 aa18.08■□□□□ 0.48
CDH1-213ENST00000612417 SLC4A10Q6U841 1118 aa18.08■□□□□ 0.48
CDH1-213ENST00000612417 FAM43AQ8N2R8 423 aa18.08■□□□□ 0.48
CDH1-213ENST00000612417 RBM42Q9BTD8 480 aaKnown RBP18.08■□□□□ 0.48
CDH1-213ENST00000612417 CHMP4AQ9BY43 222 aa18.08■□□□□ 0.48
CDH1-213ENST00000612417 ISY1Q9ULR0 285 aaKnown RBP18.08■□□□□ 0.48
CDH1-213ENST00000612417 ADAMTS7Q9UKP4 1686 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 HOXB7P09629 217 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 FLIIQ13045 1269 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 FKBP5Q13451 457 aaPredicted RBP18.07■□□□□ 0.48
CDH1-213ENST00000612417 AEBP2Q6ZN18 517 aaPredicted RBP18.07■□□□□ 0.48
CDH1-213ENST00000612417 COL22A1Q8NFW1 1626 aaPredicted RBP18.07■□□□□ 0.48
CDH1-213ENST00000612417 PXDNLA1KZ92 1463 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 PCDH11XQ9BZA7 1347 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 PCDH11YQ9BZA8 1340 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 COL14A1Q05707 1796 aaKnown RBP18.07■□□□□ 0.48
CDH1-213ENST00000612417 F6X3S4 739 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 ADAMTS2O95450 1211 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 CASC1Q6TDU7 716 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 CLEC17AQ6ZS10 378 aa18.07■□□□□ 0.48
CDH1-213ENST00000612417 HSP90AA1P07900 732 aaKnown RBP18.06■□□□□ 0.48
CDH1-213ENST00000612417 CABP4P57796 275 aa18.06■□□□□ 0.48
CDH1-213ENST00000612417 SLC39A6Q13433 755 aa18.06■□□□□ 0.48
CDH1-213ENST00000612417 DDX54Q8TDD1 881 aaKnown RBP18.06■□□□□ 0.48
CDH1-213ENST00000612417 NUTM2BA6NNL0 878 aaPredicted RBP18.05■□□□□ 0.48
CDH1-213ENST00000612417 NUTM2EB1AL46 878 aaPredicted RBP18.05■□□□□ 0.48
CDH1-213ENST00000612417 NUTM2AQ8IVF1 878 aaPredicted RBP18.05■□□□□ 0.48
CDH1-213ENST00000612417 COL16A1Q07092 1604 aaPredicted RBP18.05■□□□□ 0.48
CDH1-213ENST00000612417 SMARCA5O60264 1052 aaPredicted RBP18.05■□□□□ 0.48
CDH1-213ENST00000612417 GNAI2P04899 355 aa18.05■□□□□ 0.48
CDH1-213ENST00000612417 GIGYF1O75420 1035 aaPredicted RBP18.04■□□□□ 0.48
CDH1-213ENST00000612417 XRCC6P12956 609 aaKnown RBP eCLIP18.04■□□□□ 0.48
CDH1-213ENST00000612417 ZNF790Q6PG37 636 aa18.04■□□□□ 0.48
CDH1-213ENST00000612417 SKOR2Q2VWA4 1001 aaPredicted RBP18.03■□□□□ 0.48
CDH1-213ENST00000612417 CHPF2Q9P2E5 772 aa18.03■□□□□ 0.48
CDH1-213ENST00000612417 REC8O95072 547 aa18.03■□□□□ 0.48
CDH1-213ENST00000612417 GNAI3P08754 354 aa18.03■□□□□ 0.48
CDH1-213ENST00000612417 GZF1Q9H116 711 aaPredicted RBP18.03■□□□□ 0.48
CDH1-213ENST00000612417 TTC5Q8N0Z6 440 aa18.02■□□□□ 0.48
CDH1-213ENST00000612417 PHAXQ9H814 394 aaKnown RBP18.02■□□□□ 0.48
CDH1-213ENST00000612417 SALL3Q9BXA9 1300 aa18.02■□□□□ 0.48
CDH1-213ENST00000612417 MRE11P49959 708 aa18.02■□□□□ 0.47
CDH1-213ENST00000612417 PDE1AP54750 535 aa18.02■□□□□ 0.47
CDH1-213ENST00000612417 PRAMEF22A3QJZ6 481 aa18.01■□□□□ 0.47
CDH1-213ENST00000612417 AK9Q5TCS8 1911 aa18.01■□□□□ 0.47
CDH1-213ENST00000612417 ANXA1P04083 346 aa18■□□□□ 0.47
CDH1-213ENST00000612417 APBB1O00213 710 aa18■□□□□ 0.47
CDH1-213ENST00000612417 ERC2O15083 957 aa18■□□□□ 0.47
CDH1-213ENST00000612417 DBF4Q9UBU7 674 aaPredicted RBP18■□□□□ 0.47
CDH1-213ENST00000612417 HEG1Q9ULI3 1381 aa17.99■□□□□ 0.47
CDH1-213ENST00000612417 KAT6BQ8WYB5 2073 aa17.99■□□□□ 0.47
CDH1-213ENST00000612417 IBTKQ9P2D0 1353 aaPredicted RBP17.99■□□□□ 0.47
CDH1-213ENST00000612417 MRC1P22897 1456 aa17.98■□□□□ 0.47
CDH1-213ENST00000612417 ERVV-2B6SEH9 535 aa17.98■□□□□ 0.47
CDH1-213ENST00000612417 ATP8B2P98198 1209 aa17.98■□□□□ 0.47
CDH1-213ENST00000612417 ZNF496Q96IT1 587 aaPredicted RBP17.98■□□□□ 0.47
CDH1-213ENST00000612417 FOXD4L1Q9NU39 408 aa17.98■□□□□ 0.47
CDH1-213ENST00000612417 ST18O60284 1047 aa17.97■□□□□ 0.47
CDH1-213ENST00000612417 SSFA2P28290 1259 aa17.97■□□□□ 0.47
CDH1-213ENST00000612417 FMNL2Q96PY5 1086 aa17.97■□□□□ 0.47
CDH1-213ENST00000612417 LRRCC1Q9C099 1032 aa17.97■□□□□ 0.47
CDH1-213ENST00000612417 NKX1-1Q15270 411 aaPredicted RBP17.97■□□□□ 0.47
CDH1-213ENST00000612417 SHANK3Q9BYB0 1731 aa17.97■□□□□ 0.47
CDH1-213ENST00000612417 PLCH1Q4KWH8 1693 aa17.97■□□□□ 0.47
CDH1-213ENST00000612417 GOLGA6L22H0YM25 854 aa17.96■□□□□ 0.47
CDH1-213ENST00000612417 CYP2E1P05181 493 aaPredicted RBP17.96■□□□□ 0.47
CDH1-213ENST00000612417 NUCB2P80303 420 aa17.96■□□□□ 0.47
CDH1-213ENST00000612417 CWC22Q9HCG8 908 aaKnown RBP17.96■□□□□ 0.47
CDH1-213ENST00000612417 EXOC6BQ9Y2D4 811 aa17.96■□□□□ 0.47
CDH1-213ENST00000612417 SNRPA1P09661 255 aaKnown RBP17.95■□□□□ 0.46
CDH1-213ENST00000612417 PROSER3Q2NL68 480 aa17.95■□□□□ 0.46
CDH1-213ENST00000612417 GRPEL1Q9HAV7 217 aa17.95■□□□□ 0.46
CDH1-213ENST00000612417 PNMA6EA0A0J9YXQ4 647 aa17.95■□□□□ 0.46
CDH1-213ENST00000612417 HYPKQ9NX55 129 aa17.95■□□□□ 0.46
CDH1-213ENST00000612417 STAP2Q9UGK3 403 aa17.95■□□□□ 0.46
CDH1-213ENST00000612417 AOX1Q06278 1338 aa17.95■□□□□ 0.46
CDH1-213ENST00000612417 PI4KAP2A4QPH2 592 aa17.94■□□□□ 0.46
CDH1-213ENST00000612417 BAG4O95429 457 aaKnown RBP17.94■□□□□ 0.46
CDH1-213ENST00000612417 MX1P20591 662 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms