RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 NEUROD2Q15784 382 aa19.02■□□□□ 0.64
TUBE1-208ENST00000604743 SRP68Q9UHB9 627 aaKnown RBP19.02■□□□□ 0.64
TUBE1-208ENST00000604743 RRP7AQ9Y3A4 280 aaKnown RBP19.02■□□□□ 0.64
TUBE1-208ENST00000604743 TMPOP42166 694 aaKnown RBP19■□□□□ 0.63
TUBE1-208ENST00000604743 RUNDC1Q96C34 613 aa19■□□□□ 0.63
TUBE1-208ENST00000604743 TEX13AQ9BXU3 409 aaPredicted RBP19■□□□□ 0.63
TUBE1-208ENST00000604743 ANP32CO43423 234 aa18.99■□□□□ 0.63
TUBE1-208ENST00000604743 MMP10P09238 476 aa18.99■□□□□ 0.63
TUBE1-208ENST00000604743 GYS1P13807 737 aa18.99■□□□□ 0.63
TUBE1-208ENST00000604743 NLGN1Q8N2Q7 840 aa18.99■□□□□ 0.63
TUBE1-208ENST00000604743 NLGN2Q8NFZ4 835 aa18.99■□□□□ 0.63
TUBE1-208ENST00000604743 ZNF330Q9Y3S2 320 aaPredicted RBP18.99■□□□□ 0.63
TUBE1-208ENST00000604743 SOS1Q07889 1333 aaPredicted RBP18.99■□□□□ 0.63
TUBE1-208ENST00000604743 PRAMEF22A3QJZ6 481 aa18.98■□□□□ 0.63
TUBE1-208ENST00000604743 ZPR1O75312 459 aa18.98■□□□□ 0.63
TUBE1-208ENST00000604743 PELP1Q8IZL8 1130 aaKnown RBP18.98■□□□□ 0.63
TUBE1-208ENST00000604743 COL15A1P39059 1388 aa18.97■□□□□ 0.63
TUBE1-208ENST00000604743 CCDC184Q52MB2 194 aa18.97■□□□□ 0.63
TUBE1-208ENST00000604743 USPL1Q5W0Q7 1092 aa18.97■□□□□ 0.63
TUBE1-208ENST00000604743 USP16Q9Y5T5 823 aa18.97■□□□□ 0.63
TUBE1-208ENST00000604743 USP42Q9H9J4 1324 aaKnown RBP18.97■□□□□ 0.63
TUBE1-208ENST00000604743 A1BGP04217 495 aa18.96■□□□□ 0.63
TUBE1-208ENST00000604743 PNISRQ8TF01 805 aaKnown RBP18.96■□□□□ 0.63
TUBE1-208ENST00000604743 KDM3BQ7LBC6 1761 aa18.96■□□□□ 0.63
TUBE1-208ENST00000604743 SNRPA1P09661 255 aaKnown RBP18.95■□□□□ 0.62
TUBE1-208ENST00000604743 LMOD3Q0VAK6 560 aa18.95■□□□□ 0.62
TUBE1-208ENST00000604743 FKBP8Q14318 412 aa18.95■□□□□ 0.62
TUBE1-208ENST00000604743 PIP4K2AP48426 406 aaPredicted RBP18.94■□□□□ 0.62
TUBE1-208ENST00000604743 GPR162Q16538 588 aa18.94■□□□□ 0.62
TUBE1-208ENST00000604743 NPM2Q86SE8 214 aaKnown RBP18.94■□□□□ 0.62
TUBE1-208ENST00000604743 CD2APQ9Y5K6 639 aa18.94■□□□□ 0.62
TUBE1-208ENST00000604743 PARP3Q9Y6F1 533 aa18.94■□□□□ 0.62
TUBE1-208ENST00000604743 EIF5P55010 431 aaKnown RBP18.93■□□□□ 0.62
TUBE1-208ENST00000604743 NARFQ9UHQ1 456 aa18.93■□□□□ 0.62
TUBE1-208ENST00000604743 TSPYL4Q9UJ04 414 aa18.93■□□□□ 0.62
TUBE1-208ENST00000604743 TBC1D2BQ9UPU7 963 aa18.92■□□□□ 0.62
TUBE1-208ENST00000604743 A0A087WZG4 1122 aa18.91■□□□□ 0.62
TUBE1-208ENST00000604743 IL6STP40189 918 aaPredicted RBP18.91■□□□□ 0.62
TUBE1-208ENST00000604743 MRS2Q9HD23 443 aa18.91■□□□□ 0.62
TUBE1-208ENST00000604743 WWC3Q9ULE0 1092 aa18.91■□□□□ 0.62
TUBE1-208ENST00000604743 LAS1LQ9Y4W2 734 aaKnown RBP18.91■□□□□ 0.62
TUBE1-208ENST00000604743 APAF1O14727 1248 aa18.9■□□□□ 0.62
TUBE1-208ENST00000604743 EIF4A1P60842 406 aaKnown RBP18.9■□□□□ 0.62
TUBE1-208ENST00000604743 TRIM35Q9UPQ4 493 aa18.9■□□□□ 0.62
TUBE1-208ENST00000604743 LAMB4A4D0S4 1761 aa18.9■□□□□ 0.62
TUBE1-208ENST00000604743 SENP3-EIF4A1A0A087X0R7 540 aa18.89■□□□□ 0.61
TUBE1-208ENST00000604743 DDR1Q08345 913 aa18.89■□□□□ 0.61
TUBE1-208ENST00000604743 BICDL1Q6ZP65 573 aa18.89■□□□□ 0.61
TUBE1-208ENST00000604743 BCL2L12Q9HB09 334 aa18.89■□□□□ 0.61
TUBE1-208ENST00000604743 N4BP2Q86UW6 1770 aaPredicted RBP18.88■□□□□ 0.61
TUBE1-208ENST00000604743 GIGYF1O75420 1035 aaPredicted RBP18.88■□□□□ 0.61
TUBE1-208ENST00000604743 KIF13BQ9NQT8 1826 aa18.88■□□□□ 0.61
TUBE1-208ENST00000604743 TM4SF1P30408 202 aa18.87■□□□□ 0.61
TUBE1-208ENST00000604743 AFDNP55196 1824 aaKnown RBP18.87■□□□□ 0.61
TUBE1-208ENST00000604743 NFIXQ14938 502 aa18.87■□□□□ 0.61
TUBE1-208ENST00000604743 DZIP3Q86Y13 1208 aaKnown RBP18.87■□□□□ 0.61
TUBE1-208ENST00000604743 CHD4Q14839 1912 aa18.86■□□□□ 0.61
TUBE1-208ENST00000604743 NBPF26B4DH59 902 aa18.86■□□□□ 0.61
TUBE1-208ENST00000604743 POLRMTO00411 1230 aaKnown RBP18.86■□□□□ 0.61
TUBE1-208ENST00000604743 NBPF10Q6P3W6 841 aaKnown RBP18.86■□□□□ 0.61
TUBE1-208ENST00000604743 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
TUBE1-208ENST00000604743 NBPF15Q8N660 670 aa18.86■□□□□ 0.61
TUBE1-208ENST00000604743 YBX3P16989 372 aaKnown RBP eCLIP18.85■□□□□ 0.61
TUBE1-208ENST00000604743 SCN7AQ01118 1682 aa18.85■□□□□ 0.61
TUBE1-208ENST00000604743 C10orf71Q711Q0 1435 aa18.84■□□□□ 0.61
TUBE1-208ENST00000604743 A0A0G2JLW4 131 aa18.84■□□□□ 0.61
TUBE1-208ENST00000604743 YY1P25490 414 aa18.84■□□□□ 0.61
TUBE1-208ENST00000604743 TBC1D9BQ66K14 1250 aa18.84■□□□□ 0.61
TUBE1-208ENST00000604743 BABAM1Q9NWV8 329 aa18.84■□□□□ 0.61
TUBE1-208ENST00000604743 BCORQ6W2J9 1755 aa18.83■□□□□ 0.61
TUBE1-208ENST00000604743 CAMTA2O94983 1202 aa18.83■□□□□ 0.6
TUBE1-208ENST00000604743 SERPINB2P05120 415 aa18.83■□□□□ 0.6
TUBE1-208ENST00000604743 MYL6BP14649 208 aa18.83■□□□□ 0.6
TUBE1-208ENST00000604743 EIF2S2P20042 333 aaKnown RBP18.83■□□□□ 0.6
TUBE1-208ENST00000604743 GOLGB1Q14789 3259 aaKnown RBP18.83■□□□□ 0.6
TUBE1-208ENST00000604743 KIAA1551Q9HCM1 1747 aa18.83■□□□□ 0.6
TUBE1-208ENST00000604743 UTRNP46939 3433 aa18.82■□□□□ 0.6
TUBE1-208ENST00000604743 CHL1O00533 1208 aa18.82■□□□□ 0.6
TUBE1-208ENST00000604743 TGFB2P61812 414 aa18.82■□□□□ 0.6
TUBE1-208ENST00000604743 PXDNLA1KZ92 1463 aa18.82■□□□□ 0.6
TUBE1-208ENST00000604743 DPEP1P16444 411 aa18.81■□□□□ 0.6
TUBE1-208ENST00000604743 KRT24Q2M2I5 525 aa18.81■□□□□ 0.6
TUBE1-208ENST00000604743 NECTIN2Q92692 538 aa18.81■□□□□ 0.6
TUBE1-208ENST00000604743 GRIN3BO60391 1043 aa18.8■□□□□ 0.6
TUBE1-208ENST00000604743 FAM9BQ8IZU0 186 aa18.79■□□□□ 0.6
TUBE1-208ENST00000604743 CFAP44Q96MT7 982 aa18.79■□□□□ 0.6
TUBE1-208ENST00000604743 SETDB2Q96T68 719 aa18.79■□□□□ 0.6
TUBE1-208ENST00000604743 NRXN2Q9P2S2 1712 aa18.79■□□□□ 0.6
TUBE1-208ENST00000604743 NPHP1O15259 732 aa18.78■□□□□ 0.6
TUBE1-208ENST00000604743 CHRNA5P30532 468 aa18.78■□□□□ 0.6
TUBE1-208ENST00000604743 CCDC24Q8N4L8 307 aa18.78■□□□□ 0.6
TUBE1-208ENST00000604743 BCS1LQ9Y276 419 aa18.78■□□□□ 0.6
TUBE1-208ENST00000604743 ZNF652Q9Y2D9 606 aa18.78■□□□□ 0.6
TUBE1-208ENST00000604743 NUP98P52948 1817 aa18.77■□□□□ 0.6
TUBE1-208ENST00000604743 ANXA1P04083 346 aa18.77■□□□□ 0.6
TUBE1-208ENST00000604743 MBIPQ9NS73 344 aa18.77■□□□□ 0.6
TUBE1-208ENST00000604743 SALL2Q9Y467 1007 aaPredicted RBP18.77■□□□□ 0.6
TUBE1-208ENST00000604743 BRCA1P38398 1863 aaKnown RBP18.77■□□□□ 0.6
TUBE1-208ENST00000604743 CARMIL3Q8ND23 1372 aa18.77■□□□□ 0.6
TUBE1-208ENST00000604743 GNAI1P63096 354 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms