RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 DALRD3Q5D0E6 543 aaKnown RBP18.26■□□□□ 0.51
TRIM28-211ENST00000597968 USPL1Q5W0Q7 1092 aa18.26■□□□□ 0.51
TRIM28-211ENST00000597968 ZNF790Q6PG37 636 aa18.26■□□□□ 0.51
TRIM28-211ENST00000597968 UBR2Q8IWV8 1755 aa18.26■□□□□ 0.51
TRIM28-211ENST00000597968 CEMIPQ8WUJ3 1361 aa18.26■□□□□ 0.51
TRIM28-211ENST00000597968 CEP350Q5VT06 3117 aa18.25■□□□□ 0.51
TRIM28-211ENST00000597968 BRCA1P38398 1863 aaKnown RBP18.25■□□□□ 0.51
TRIM28-211ENST00000597968 WWC3Q9ULE0 1092 aa18.25■□□□□ 0.51
TRIM28-211ENST00000597968 ZBTB1Q9Y2K1 713 aa18.25■□□□□ 0.51
TRIM28-211ENST00000597968 N4BP2Q86UW6 1770 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-211ENST00000597968 EIF5P55010 431 aaKnown RBP18.24■□□□□ 0.51
TRIM28-211ENST00000597968 ARHGAP27Q6ZUM4 889 aa18.24■□□□□ 0.51
TRIM28-211ENST00000597968 IL17REQ8NFR9 667 aa18.24■□□□□ 0.51
TRIM28-211ENST00000597968 PDZRN3Q9UPQ7 1066 aa18.24■□□□□ 0.51
TRIM28-211ENST00000597968 HEG1Q9ULI3 1381 aa18.24■□□□□ 0.51
TRIM28-211ENST00000597968 VIRMAQ69YN4 1812 aaKnown RBP18.23■□□□□ 0.51
TRIM28-211ENST00000597968 FMNL2Q96PY5 1086 aa18.23■□□□□ 0.51
TRIM28-211ENST00000597968 ARFGEF1Q9Y6D6 1849 aa18.23■□□□□ 0.51
TRIM28-211ENST00000597968 IL6STP40189 918 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-211ENST00000597968 NFIXQ14938 502 aa18.22■□□□□ 0.51
TRIM28-211ENST00000597968 RSPH6AQ9H0K4 717 aa18.22■□□□□ 0.51
TRIM28-211ENST00000597968 KIF3CO14782 793 aa18.21■□□□□ 0.51
TRIM28-211ENST00000597968 HTATSF1O43719 755 aaKnown RBP18.21■□□□□ 0.51
TRIM28-211ENST00000597968 HSPA6P17066 643 aa18.21■□□□□ 0.51
TRIM28-211ENST00000597968 ZNF496Q96IT1 587 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-211ENST00000597968 ZC3H4Q9UPT8 1303 aaKnown RBP18.21■□□□□ 0.51
TRIM28-211ENST00000597968 NRXN2Q9P2S2 1712 aa18.2■□□□□ 0.5
TRIM28-211ENST00000597968 TOMM70O94826 608 aa18.2■□□□□ 0.5
TRIM28-211ENST00000597968 PRKAR2BP31323 418 aa18.2■□□□□ 0.5
TRIM28-211ENST00000597968 CNGB1Q14028 1251 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-211ENST00000597968 NPM2Q86SE8 214 aaKnown RBP18.2■□□□□ 0.5
TRIM28-211ENST00000597968 ZNF526Q8TF50 670 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-211ENST00000597968 BCL2L12Q9HB09 334 aa18.2■□□□□ 0.5
TRIM28-211ENST00000597968 SERPINB2P05120 415 aa18.19■□□□□ 0.5
TRIM28-211ENST00000597968 CANXP27824 592 aaKnown RBP18.19■□□□□ 0.5
TRIM28-211ENST00000597968 SIPA1L3O60292 1781 aaPredicted RBP18.18■□□□□ 0.5
TRIM28-211ENST00000597968 BTBD11A6QL63 1104 aa18.18■□□□□ 0.5
TRIM28-211ENST00000597968 RGL2O15211 777 aa18.18■□□□□ 0.5
TRIM28-211ENST00000597968 PPP2R1AP30153 589 aa18.18■□□□□ 0.5
TRIM28-211ENST00000597968 RTF1Q92541 710 aaKnown RBP18.18■□□□□ 0.5
TRIM28-211ENST00000597968 C9orf131Q5VYM1 1079 aa18.17■□□□□ 0.5
TRIM28-211ENST00000597968 PHACTR3Q96KR7 559 aa18.17■□□□□ 0.5
TRIM28-211ENST00000597968 KDM2BQ8NHM5 1336 aa18.17■□□□□ 0.5
TRIM28-211ENST00000597968 U2AF1L5P0DN76 240 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-211ENST00000597968 CHRNA5P30532 468 aa18.16■□□□□ 0.5
TRIM28-211ENST00000597968 U2AF1Q01081 240 aaKnown RBP eCLIP18.16■□□□□ 0.5
TRIM28-211ENST00000597968 H0YIN7 160 aa18.15■□□□□ 0.5
TRIM28-211ENST00000597968 TTLL6Q8N841 843 aa18.15■□□□□ 0.5
TRIM28-211ENST00000597968 CARMIL3Q8ND23 1372 aa18.15■□□□□ 0.5
TRIM28-211ENST00000597968 PDE6BP35913 854 aa18.14■□□□□ 0.49
TRIM28-211ENST00000597968 CLEC4GQ6UXB4 293 aa18.14■□□□□ 0.49
TRIM28-211ENST00000597968 BRIP1Q9BX63 1249 aa18.14■□□□□ 0.49
TRIM28-211ENST00000597968 NEFMP07197 916 aa18.13■□□□□ 0.49
TRIM28-211ENST00000597968 SNRPA1P09661 255 aaKnown RBP18.13■□□□□ 0.49
TRIM28-211ENST00000597968 RBM46Q8TBY0 533 aaKnown RBP18.13■□□□□ 0.49
TRIM28-211ENST00000597968 AFDNP55196 1824 aaKnown RBP18.13■□□□□ 0.49
TRIM28-211ENST00000597968 SCN7AQ01118 1682 aa18.12■□□□□ 0.49
TRIM28-211ENST00000597968 APLP1P51693 650 aa18.12■□□□□ 0.49
TRIM28-211ENST00000597968 PNNQ9H307 717 aaKnown RBP18.12■□□□□ 0.49
TRIM28-211ENST00000597968 RNF181Q9P0P0 153 aa18.12■□□□□ 0.49
TRIM28-211ENST00000597968 DLEC1Q9Y238 1755 aa18.12■□□□□ 0.49
TRIM28-211ENST00000597968 LMNB1P20700 586 aa18.11■□□□□ 0.49
TRIM28-211ENST00000597968 TBC1D9BQ66K14 1250 aa18.11■□□□□ 0.49
TRIM28-211ENST00000597968 C2CD5Q86YS7 1000 aa18.11■□□□□ 0.49
TRIM28-211ENST00000597968 SETDB2Q96T68 719 aa18.11■□□□□ 0.49
TRIM28-211ENST00000597968 CAMTA2O94983 1202 aa18.1■□□□□ 0.49
TRIM28-211ENST00000597968 FSTL1Q12841 308 aa18.1■□□□□ 0.49
TRIM28-211ENST00000597968 C16orf71Q8IYS4 520 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-211ENST00000597968 PNISRQ8TF01 805 aaKnown RBP18.1■□□□□ 0.49
TRIM28-211ENST00000597968 TBC1D2BQ9UPU7 963 aa18.1■□□□□ 0.49
TRIM28-211ENST00000597968 ZNF652Q9Y2D9 606 aa18.1■□□□□ 0.49
TRIM28-211ENST00000597968 A1BGP04217 495 aa18.09■□□□□ 0.49
TRIM28-211ENST00000597968 TAF7Q15545 349 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-211ENST00000597968 NMRK2Q9NPI5 230 aa18.09■□□□□ 0.49
TRIM28-211ENST00000597968 ST5P78524 1137 aa18.08■□□□□ 0.48
TRIM28-211ENST00000597968 PRR5LQ6MZQ0 368 aa18.08■□□□□ 0.48
TRIM28-211ENST00000597968 BICDL1Q6ZP65 573 aa18.08■□□□□ 0.48
TRIM28-211ENST00000597968 DZIP3Q86Y13 1208 aaKnown RBP18.08■□□□□ 0.48
TRIM28-211ENST00000597968 ZNF330Q9Y3S2 320 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-211ENST00000597968 USP16Q9Y5T5 823 aa18.08■□□□□ 0.48
TRIM28-211ENST00000597968 KCNQ3O43525 872 aa18.07■□□□□ 0.48
TRIM28-211ENST00000597968 SOGA3Q5TF21 947 aa18.07■□□□□ 0.48
TRIM28-211ENST00000597968 MCM10Q7L590 875 aa18.07■□□□□ 0.48
TRIM28-211ENST00000597968 CNBD1Q8NA66 436 aa18.07■□□□□ 0.48
TRIM28-211ENST00000597968 CNKSR1Q969H4 720 aa18.06■□□□□ 0.48
TRIM28-211ENST00000597968 TNRC6CQ9HCJ0 1690 aaKnown RBP18.06■□□□□ 0.48
TRIM28-211ENST00000597968 LTBP3Q9NS15 1303 aa18.05■□□□□ 0.48
TRIM28-211ENST00000597968 GLTPD2A6NH11 291 aa18.05■□□□□ 0.48
TRIM28-211ENST00000597968 STYK1Q6J9G0 422 aa18.05■□□□□ 0.48
TRIM28-211ENST00000597968 SBF1O95248 1867 aa18.05■□□□□ 0.48
TRIM28-211ENST00000597968 NPHP1O15259 732 aa18.04■□□□□ 0.48
TRIM28-211ENST00000597968 BCORQ6W2J9 1755 aa18.04■□□□□ 0.48
TRIM28-211ENST00000597968 SRGNP10124 158 aa18.03■□□□□ 0.48
TRIM28-211ENST00000597968 DPY19L2Q6NUT2 758 aa18.03■□□□□ 0.48
TRIM28-211ENST00000597968 TPTE2Q6XPS3 522 aa18.03■□□□□ 0.48
TRIM28-211ENST00000597968 ZNF622Q969S3 477 aaKnown RBP eCLIP18.03■□□□□ 0.48
TRIM28-211ENST00000597968 MASTLQ96GX5 879 aa18.03■□□□□ 0.48
TRIM28-211ENST00000597968 PLEKHF1Q96S99 279 aa18.03■□□□□ 0.48
TRIM28-211ENST00000597968 KLRG2A4D1S0 409 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-211ENST00000597968 NFKBIEO00221 500 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms