RNA–Protein interactions for RNA: ENST00000597180.1

IRF3-216, Transcript of interferon regulatory factor 3, humanhuman

TSL 5

Gene IRF3, Length 301 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-216ENST00000597180 ATF5Q9Y2D1 282 aaPredicted RBP23.73■■□□□ 1.39
IRF3-216ENST00000597180 MSH5O43196 834 aa23.72■■□□□ 1.39
IRF3-216ENST00000597180 SNRPA1P09661 255 aaKnown RBP23.72■■□□□ 1.39
IRF3-216ENST00000597180 NCBP3Q53F19 620 aaKnown RBP23.72■■□□□ 1.39
IRF3-216ENST00000597180 FAM9BQ8IZU0 186 aa23.72■■□□□ 1.39
IRF3-216ENST00000597180 SGIP1Q9BQI5 828 aa23.72■■□□□ 1.39
IRF3-216ENST00000597180 TSPYL4Q9UJ04 414 aa23.72■■□□□ 1.39
IRF3-216ENST00000597180 EIF4A1P60842 406 aaKnown RBP23.71■■□□□ 1.39
IRF3-216ENST00000597180 TRAPPC3LQ5T215 181 aa23.71■■□□□ 1.39
IRF3-216ENST00000597180 SOS1Q07889 1333 aaPredicted RBP23.7■■□□□ 1.38
IRF3-216ENST00000597180 CHL1O00533 1208 aa23.7■■□□□ 1.38
IRF3-216ENST00000597180 CCDC27Q2M243 656 aa23.7■■□□□ 1.38
IRF3-216ENST00000597180 ZBTB1Q9Y2K1 713 aa23.7■■□□□ 1.38
IRF3-216ENST00000597180 ARHGEF1Q92888 912 aaKnown RBP23.69■■□□□ 1.38
IRF3-216ENST00000597180 SRCAPQ6ZRS2 3230 aa23.68■■□□□ 1.38
IRF3-216ENST00000597180 PRAMEF22A3QJZ6 481 aa23.68■■□□□ 1.38
IRF3-216ENST00000597180 USP16Q9Y5T5 823 aa23.68■■□□□ 1.38
IRF3-216ENST00000597180 GIGYF1O75420 1035 aaPredicted RBP23.67■■□□□ 1.38
IRF3-216ENST00000597180 CALD1Q05682 793 aaKnown RBP23.67■■□□□ 1.38
IRF3-216ENST00000597180 CFAP44Q96MT7 982 aa23.67■■□□□ 1.38
IRF3-216ENST00000597180 COL15A1P39059 1388 aa23.65■■□□□ 1.38
IRF3-216ENST00000597180 ZNF853P0CG23 659 aa23.65■■□□□ 1.38
IRF3-216ENST00000597180 RFC4P35249 363 aa23.65■■□□□ 1.38
IRF3-216ENST00000597180 A1BGP04217 495 aa23.64■■□□□ 1.37
IRF3-216ENST00000597180 CANXP27824 592 aaKnown RBP23.64■■□□□ 1.37
IRF3-216ENST00000597180 POLD1P28340 1107 aa23.64■■□□□ 1.37
IRF3-216ENST00000597180 EIF5P55010 431 aaKnown RBP23.64■■□□□ 1.37
IRF3-216ENST00000597180 WWC1Q8IX03 1113 aa23.64■■□□□ 1.37
IRF3-216ENST00000597180 IFT57Q9NWB7 429 aa23.64■■□□□ 1.37
IRF3-216ENST00000597180 IL6STP40189 918 aaPredicted RBP23.63■■□□□ 1.37
IRF3-216ENST00000597180 MSL1Q68DK7 614 aa23.63■■□□□ 1.37
IRF3-216ENST00000597180 LAS1LQ9Y4W2 734 aaKnown RBP23.63■■□□□ 1.37
IRF3-216ENST00000597180 SCN7AQ01118 1682 aa23.63■■□□□ 1.37
IRF3-216ENST00000597180 USP42Q9H9J4 1324 aaKnown RBP23.62■■□□□ 1.37
IRF3-216ENST00000597180 SENP3-EIF4A1A0A087X0R7 540 aa23.62■■□□□ 1.37
IRF3-216ENST00000597180 GNAI1P63096 354 aa23.62■■□□□ 1.37
IRF3-216ENST00000597180 MIER1Q8N108 512 aa23.62■■□□□ 1.37
IRF3-216ENST00000597180 PPP1R1BQ9UD71 204 aaPredicted RBP23.62■■□□□ 1.37
IRF3-216ENST00000597180 BCORQ6W2J9 1755 aa23.62■■□□□ 1.37
IRF3-216ENST00000597180 GYS1P13807 737 aa23.61■■□□□ 1.37
IRF3-216ENST00000597180 NGEFQ8N5V2 710 aa23.61■■□□□ 1.37
IRF3-216ENST00000597180 MBIPQ9NS73 344 aa23.61■■□□□ 1.37
IRF3-216ENST00000597180 ARXQ96QS3 562 aa23.6■■□□□ 1.37
IRF3-216ENST00000597180 NARFQ9UHQ1 456 aa23.6■■□□□ 1.37
IRF3-216ENST00000597180 A0A087WZG4 1122 aa23.59■■□□□ 1.37
IRF3-216ENST00000597180 NLGN1Q8N2Q7 840 aa23.59■■□□□ 1.37
IRF3-216ENST00000597180 SRP68Q9UHB9 627 aaKnown RBP23.59■■□□□ 1.37
IRF3-216ENST00000597180 IL16Q14005 1332 aa23.59■■□□□ 1.37
IRF3-216ENST00000597180 NBPF26B4DH59 902 aa23.58■■□□□ 1.37
IRF3-216ENST00000597180 NBPF10Q6P3W6 841 aaKnown RBP23.58■■□□□ 1.37
IRF3-216ENST00000597180 NBPF15Q8N660 670 aa23.58■■□□□ 1.37
IRF3-216ENST00000597180 ZPR1O75312 459 aa23.57■■□□□ 1.36
IRF3-216ENST00000597180 ERBB4Q15303 1308 aa23.57■■□□□ 1.36
IRF3-216ENST00000597180 PIP4K2AP48426 406 aaPredicted RBP23.56■■□□□ 1.36
IRF3-216ENST00000597180 KRT24Q2M2I5 525 aa23.56■■□□□ 1.36
IRF3-216ENST00000597180 WDR63Q8IWG1 891 aa23.56■■□□□ 1.36
IRF3-216ENST00000597180 HOXB7P09629 217 aa23.55■■□□□ 1.36
IRF3-216ENST00000597180 USPL1Q5W0Q7 1092 aa23.55■■□□□ 1.36
IRF3-216ENST00000597180 SALL2Q9Y467 1007 aaPredicted RBP23.55■■□□□ 1.36
IRF3-216ENST00000597180 KIF13BQ9NQT8 1826 aa23.54■■□□□ 1.36
IRF3-216ENST00000597180 FKBP8Q14318 412 aa23.54■■□□□ 1.36
IRF3-216ENST00000597180 BCL2L12Q9HB09 334 aa23.54■■□□□ 1.36
IRF3-216ENST00000597180 ZNF330Q9Y3S2 320 aaPredicted RBP23.54■■□□□ 1.36
IRF3-216ENST00000597180 MMP10P09238 476 aa23.53■■□□□ 1.36
IRF3-216ENST00000597180 NPM2Q86SE8 214 aaKnown RBP23.53■■□□□ 1.36
IRF3-216ENST00000597180 FHDC1Q9C0D6 1143 aaPredicted RBP23.53■■□□□ 1.36
IRF3-216ENST00000597180 AFDNP55196 1824 aaKnown RBP23.53■■□□□ 1.36
IRF3-216ENST00000597180 TBC1D2BQ9UPU7 963 aa23.52■■□□□ 1.36
IRF3-216ENST00000597180 NRXN2Q9P2S2 1712 aa23.51■■□□□ 1.35
IRF3-216ENST00000597180 DUSP27Q5VZP5 1158 aa23.51■■□□□ 1.35
IRF3-216ENST00000597180 DZIP3Q86Y13 1208 aaKnown RBP23.51■■□□□ 1.35
IRF3-216ENST00000597180 NUP98P52948 1817 aa23.51■■□□□ 1.35
IRF3-216ENST00000597180 ZNF521Q96K83 1311 aa23.51■■□□□ 1.35
IRF3-216ENST00000597180 CAMTA2O94983 1202 aa23.5■■□□□ 1.35
IRF3-216ENST00000597180 EIF2S2P20042 333 aaKnown RBP23.5■■□□□ 1.35
IRF3-216ENST00000597180 PDIA6Q15084 440 aa23.5■■□□□ 1.35
IRF3-216ENST00000597180 SYT17Q9BSW7 474 aa23.5■■□□□ 1.35
IRF3-216ENST00000597180 TM4SF1P30408 202 aa23.49■■□□□ 1.35
IRF3-216ENST00000597180 TSR2Q969E8 191 aaKnown RBP23.49■■□□□ 1.35
IRF3-216ENST00000597180 RGL2O15211 777 aa23.48■■□□□ 1.35
IRF3-216ENST00000597180 LRP10Q7Z4F1 713 aa23.48■■□□□ 1.35
IRF3-216ENST00000597180 MYL6BP14649 208 aa23.47■■□□□ 1.35
IRF3-216ENST00000597180 DDR1Q08345 913 aa23.47■■□□□ 1.35
IRF3-216ENST00000597180 NFIXQ14938 502 aa23.47■■□□□ 1.35
IRF3-216ENST00000597180 C8orf58Q8NAV2 365 aa23.47■■□□□ 1.35
IRF3-216ENST00000597180 PARP3Q9Y6F1 533 aa23.47■■□□□ 1.35
IRF3-216ENST00000597180 HDGFL1Q5TGJ6 251 aa23.46■■□□□ 1.35
IRF3-216ENST00000597180 KIAA1551Q9HCM1 1747 aa23.46■■□□□ 1.35
IRF3-216ENST00000597180 FANCIQ9NVI1 1328 aa23.46■■□□□ 1.35
IRF3-216ENST00000597180 CD2APQ9Y5K6 639 aa23.46■■□□□ 1.35
IRF3-216ENST00000597180 C10orf71Q711Q0 1435 aa23.45■■□□□ 1.34
IRF3-216ENST00000597180 POLRMTO00411 1230 aaKnown RBP23.45■■□□□ 1.34
IRF3-216ENST00000597180 PROSER3Q2NL68 480 aa23.45■■□□□ 1.34
IRF3-216ENST00000597180 CLEC4GQ6UXB4 293 aa23.45■■□□□ 1.34
IRF3-216ENST00000597180 NECTIN2Q92692 538 aa23.45■■□□□ 1.34
IRF3-216ENST00000597180 DDX21Q9NR30 783 aaKnown RBP eCLIP23.45■■□□□ 1.34
IRF3-216ENST00000597180 CACNA1FO60840 1977 aa23.45■■□□□ 1.34
IRF3-216ENST00000597180 TBC1D9BQ66K14 1250 aa23.44■■□□□ 1.34
IRF3-216ENST00000597180 KLHL34Q8N239 644 aa23.44■■□□□ 1.34
IRF3-216ENST00000597180 SPINK5Q9NQ38 1064 aaPredicted RBP23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 287.7 ms