RNA–Protein interactions for RNA: ENST00000596378.1

SRRM1-222, Transcript of serine and arginine repetitive matrix 1, human

TSL 1 (best)

Gene SRRM1, Length 2,314 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-222	ENST00000596378	RTN4	Q9NQC3	1192 aa	Known RBP	27.84	■■■□□ 2.05
SRRM1-222	ENST00000596378	AK9	Q5TCS8	1911 aa		27.84	■■■□□ 2.05
SRRM1-222	ENST00000596378	STAP2	Q9UGK3	403 aa		27.84	■■■□□ 2.05
SRRM1-222	ENST00000596378	DDX11L8	A8MPP1	907 aa		27.83	■■■□□ 2.05
SRRM1-222	ENST00000596378	SIPA1L3	O60292	1781 aa	Predicted RBP	27.83	■■■□□ 2.05
SRRM1-222	ENST00000596378	ESYT1	Q9BSJ8	1104 aa		27.83	■■■□□ 2.04
SRRM1-222	ENST00000596378	OVOS2	A0A0G2JMS6	1433 aa		27.82	■■■□□ 2.04
SRRM1-222	ENST00000596378	TMEM94	Q12767	1356 aa		27.82	■■■□□ 2.04
SRRM1-222	ENST00000596378	SSFA2	P28290	1259 aa		27.82	■■■□□ 2.04
SRRM1-222	ENST00000596378	MAP3K2	Q9Y2U5	619 aa		27.82	■■■□□ 2.04
SRRM1-222	ENST00000596378	MST1R	Q04912	1400 aa		27.82	■■■□□ 2.04
SRRM1-222	ENST00000596378	ATF3	P18847	181 aa		27.81	■■■□□ 2.04
SRRM1-222	ENST00000596378	NLRP2	Q9NX02	1062 aa		27.81	■■■□□ 2.04
SRRM1-222	ENST00000596378	CABLES1	Q8TDN4	633 aa		27.81	■■■□□ 2.04
SRRM1-222	ENST00000596378	STRCP1	A6NGW2	1772 aa		27.81	■■■□□ 2.04
SRRM1-222	ENST00000596378	HEG1	Q9ULI3	1381 aa		27.81	■■■□□ 2.04
SRRM1-222	ENST00000596378	CHML	P26374	656 aa		27.8	■■■□□ 2.04
SRRM1-222	ENST00000596378	RHPN1	Q8TCX5	695 aa		27.8	■■■□□ 2.04
SRRM1-222	ENST00000596378	CHMP4A	Q9BY43	222 aa		27.8	■■■□□ 2.04
SRRM1-222	ENST00000596378	MAP4K4	O95819	1239 aa	Predicted RBP	27.79	■■■□□ 2.04
SRRM1-222	ENST00000596378	SLC39A6	Q13433	755 aa		27.79	■■■□□ 2.04
SRRM1-222	ENST00000596378	CWF19L2	Q2TBE0	894 aa	Known RBP	27.78	■■■□□ 2.04
SRRM1-222	ENST00000596378	GBP4	Q96PP9	640 aa		27.78	■■■□□ 2.04
SRRM1-222	ENST00000596378	RAB11FIP3	O75154	756 aa		27.78	■■■□□ 2.04
SRRM1-222	ENST00000596378	ST18	O60284	1047 aa		27.77	■■■□□ 2.04
SRRM1-222	ENST00000596378	RAPGEF4	Q8WZA2	1011 aa		27.77	■■■□□ 2.04
SRRM1-222	ENST00000596378	IL25	Q9H293	177 aa		27.76	■■■□□ 2.03
SRRM1-222	ENST00000596378	ANO2	Q9NQ90	1003 aa		27.76	■■■□□ 2.03
SRRM1-222	ENST00000596378	ADAMTS7	Q9UKP4	1686 aa		27.76	■■■□□ 2.03
SRRM1-222	ENST00000596378	KSR2	Q6VAB6	950 aa		27.75	■■■□□ 2.03
SRRM1-222	ENST00000596378	PALD1	Q9ULE6	856 aa		27.75	■■■□□ 2.03
SRRM1-222	ENST00000596378	AIMP1	Q12904	312 aa	Known RBP	27.75	■■■□□ 2.03
SRRM1-222	ENST00000596378	CHRNA2	Q15822	529 aa		27.75	■■■□□ 2.03
SRRM1-222	ENST00000596378	KIF1BP	Q96EK5	621 aa		27.74	■■■□□ 2.03
SRRM1-222	ENST00000596378	C9orf78	Q9NZ63	289 aa	Predicted RBP	27.74	■■■□□ 2.03
SRRM1-222	ENST00000596378	KDM6A	O15550	1401 aa	Predicted RBP	27.74	■■■□□ 2.03
SRRM1-222	ENST00000596378	MEGF6	O75095	1541 aa		27.74	■■■□□ 2.03
SRRM1-222	ENST00000596378	PI4K2B	Q8TCG2	481 aa		27.74	■■■□□ 2.03
SRRM1-222	ENST00000596378	AOX1	Q06278	1338 aa		27.74	■■■□□ 2.03
SRRM1-222	ENST00000596378	ZGPAT	Q8N5A5	531 aa	Known RBP	27.73	■■■□□ 2.03
SRRM1-222	ENST00000596378	PKP1	Q13835	747 aa		27.73	■■■□□ 2.03
SRRM1-222	ENST00000596378	NPHP3	Q7Z494	1330 aa		27.73	■■■□□ 2.03
SRRM1-222	ENST00000596378	CSB-PGBD3	P0DP91	1061 aa		27.72	■■■□□ 2.03
SRRM1-222	ENST00000596378	NEK4	P51957	841 aa		27.72	■■■□□ 2.03
SRRM1-222	ENST00000596378	ZNF790	Q6PG37	636 aa		27.71	■■■□□ 2.03
SRRM1-222	ENST00000596378	NFATC2IP	Q8NCF5	419 aa		27.71	■■■□□ 2.03
SRRM1-222	ENST00000596378	HYPK	Q9NX55	129 aa		27.71	■■■□□ 2.03
SRRM1-222	ENST00000596378	C5	P01031	1676 aa		27.71	■■■□□ 2.03
SRRM1-222	ENST00000596378	SCN11A	Q9UI33	1791 aa		27.71	■■■□□ 2.03
SRRM1-222	ENST00000596378	PHKG2	P15735	406 aa		27.7	■■■□□ 2.03
SRRM1-222	ENST00000596378	TAT	P17735	454 aa	Predicted RBP	27.7	■■■□□ 2.03
SRRM1-222	ENST00000596378	OS9	Q13438	667 aa	Predicted RBP	27.7	■■■□□ 2.03
SRRM1-222	ENST00000596378	PDIA6	Q15084	440 aa		27.7	■■■□□ 2.03
SRRM1-222	ENST00000596378	SLC52A2	Q9HAB3	445 aa		27.7	■■■□□ 2.03
SRRM1-222	ENST00000596378	COL18A1	P39060	1754 aa		27.7	■■■□□ 2.03
SRRM1-222	ENST00000596378	GOLGA6L3	A6NEY3	463 aa		27.7	■■■□□ 2.02
SRRM1-222	ENST00000596378	ALDH1L1	O75891	902 aa		27.7	■■■□□ 2.02
SRRM1-222	ENST00000596378	PA2G4	Q9UQ80	394 aa	Known RBP	27.7	■■■□□ 2.02
SRRM1-222	ENST00000596378	CRYBG1	Q9Y4K1	1723 aa		27.7	■■■□□ 2.02
SRRM1-222	ENST00000596378	FSD2	A1L4K1	749 aa		27.69	■■■□□ 2.02
SRRM1-222	ENST00000596378	L1TD1	Q5T7N2	865 aa	Known RBP	27.69	■■■□□ 2.02
SRRM1-222	ENST00000596378	DDX21	Q9NR30	783 aa	Known RBP eCLIP	27.69	■■■□□ 2.02
SRRM1-222	ENST00000596378	MYL6B	P14649	208 aa		27.68	■■■□□ 2.02
SRRM1-222	ENST00000596378	LMTK3	Q96Q04	1460 aa		27.67	■■■□□ 2.02
SRRM1-222	ENST00000596378	MTX1	Q13505	466 aa		27.67	■■■□□ 2.02
SRRM1-222	ENST00000596378	BAG4	O95429	457 aa	Known RBP	27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	MCC	P23508	829 aa		27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	HSPA2	P54652	639 aa		27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	SPG7	Q9UQ90	795 aa		27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	XRCC6	P12956	609 aa	Known RBP eCLIP	27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	HSP90AB4P	Q58FF6	505 aa		27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	SUCLG2	Q96I99	432 aa		27.66	■■■□□ 2.02
SRRM1-222	ENST00000596378	TNS3	Q68CZ2	1445 aa		27.65	■■■□□ 2.02
SRRM1-222	ENST00000596378	NOL8	Q76FK4	1167 aa	Known RBP	27.65	■■■□□ 2.02
SRRM1-222	ENST00000596378	LINS1	Q8NG48	757 aa		27.65	■■■□□ 2.02
SRRM1-222	ENST00000596378	KAZALD1	Q96I82	304 aa		27.64	■■■□□ 2.02
SRRM1-222	ENST00000596378	ZNF496	Q96IT1	587 aa	Predicted RBP	27.64	■■■□□ 2.02
SRRM1-222	ENST00000596378	DCC	P43146	1447 aa		27.64	■■■□□ 2.02
SRRM1-222	ENST00000596378	GRM8	O00222	908 aa		27.64	■■■□□ 2.02
SRRM1-222	ENST00000596378	CYP2E1	P05181	493 aa	Predicted RBP	27.64	■■■□□ 2.02
SRRM1-222	ENST00000596378	PIP4K2A	P48426	406 aa	Predicted RBP	27.64	■■■□□ 2.02
SRRM1-222	ENST00000596378	DDX58	O95786	925 aa	Known RBP	27.63	■■■□□ 2.01
SRRM1-222	ENST00000596378	CYP27B1	O15528	508 aa		27.63	■■■□□ 2.01
SRRM1-222	ENST00000596378	NUCB2	P80303	420 aa		27.63	■■■□□ 2.01
SRRM1-222	ENST00000596378	CADPS2	Q86UW7	1296 aa		27.63	■■■□□ 2.01
SRRM1-222	ENST00000596378	IFNL2	Q8IZJ0	200 aa		27.63	■■■□□ 2.01
SRRM1-222	ENST00000596378	TMX3	Q96JJ7	454 aa		27.63	■■■□□ 2.01
SRRM1-222	ENST00000596378	IGKV5-2	P06315	115 aa		27.62	■■■□□ 2.01
SRRM1-222	ENST00000596378	CLEC17A	Q6ZS10	378 aa		27.62	■■■□□ 2.01
SRRM1-222	ENST00000596378	RIC3	Q7Z5B4	369 aa		27.62	■■■□□ 2.01
SRRM1-222	ENST00000596378	PANK2	Q9BZ23	570 aa		27.62	■■■□□ 2.01
SRRM1-222	ENST00000596378	UPF3B	Q9BZI7	483 aa	Known RBP	27.62	■■■□□ 2.01
SRRM1-222	ENST00000596378	BICC1	Q9H694	974 aa	Known RBP	27.62	■■■□□ 2.01
SRRM1-222	ENST00000596378	CWC22	Q9HCG8	908 aa	Known RBP	27.61	■■■□□ 2.01
SRRM1-222	ENST00000596378	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	27.61	■■■□□ 2.01
SRRM1-222	ENST00000596378	CNTROB	Q8N137	903 aa		27.61	■■■□□ 2.01
SRRM1-222	ENST00000596378	XAGE3	Q8WTP9	111 aa		27.61	■■■□□ 2.01
SRRM1-222	ENST00000596378	ANAPC15	P60006	121 aa		27.6	■■■□□ 2.01
SRRM1-222	ENST00000596378	CLASRP	Q8N2M8	674 aa	Known RBP	27.6	■■■□□ 2.01
SRRM1-222	ENST00000596378	MCTP1	Q6DN14	999 aa		27.59	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms