RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZBTB1Q9Y2K1 713 aa21.4■■□□□ 1.02
TRIM28-206ENST00000595974 KCNQ3O43525 872 aa21.39■■□□□ 1.01
TRIM28-206ENST00000595974 TAF7Q15545 349 aaPredicted RBP21.39■■□□□ 1.01
TRIM28-206ENST00000595974 PNISRQ8TF01 805 aaKnown RBP21.38■■□□□ 1.01
TRIM28-206ENST00000595974 CD2APQ9Y5K6 639 aa21.38■■□□□ 1.01
TRIM28-206ENST00000595974 MMP10P09238 476 aa21.37■■□□□ 1.01
TRIM28-206ENST00000595974 LMOD3Q0VAK6 560 aa21.37■■□□□ 1.01
TRIM28-206ENST00000595974 SCN7AQ01118 1682 aa21.37■■□□□ 1.01
TRIM28-206ENST00000595974 CHD4Q14839 1912 aa21.36■■□□□ 1.01
TRIM28-206ENST00000595974 TMPOP42166 694 aaKnown RBP21.36■■□□□ 1.01
TRIM28-206ENST00000595974 RUNDC1Q96C34 613 aa21.36■■□□□ 1.01
TRIM28-206ENST00000595974 SRP68Q9UHB9 627 aaKnown RBP21.36■■□□□ 1.01
TRIM28-206ENST00000595974 RIPK4P57078 832 aa21.35■■□□□ 1.01
TRIM28-206ENST00000595974 CCDC146Q8IYE0 955 aa21.35■■□□□ 1.01
TRIM28-206ENST00000595974 NLGN2Q8NFZ4 835 aa21.35■■□□□ 1.01
TRIM28-206ENST00000595974 ADAMTS8Q9UP79 889 aa21.35■■□□□ 1.01
TRIM28-206ENST00000595974 ZPR1O75312 459 aa21.34■■□□□ 1.01
TRIM28-206ENST00000595974 SNRPA1P09661 255 aaKnown RBP21.34■■□□□ 1.01
TRIM28-206ENST00000595974 CANXP27824 592 aaKnown RBP21.34■■□□□ 1.01
TRIM28-206ENST00000595974 THUMPD2Q9BTF0 503 aaKnown RBP21.34■■□□□ 1.01
TRIM28-206ENST00000595974 GOLGB1Q14789 3259 aaKnown RBP21.33■■□□□ 1.01
TRIM28-206ENST00000595974 EIF5P55010 431 aaKnown RBP21.33■■□□□ 1.01
TRIM28-206ENST00000595974 NARFQ9UHQ1 456 aa21.33■■□□□ 1.01
TRIM28-206ENST00000595974 BCORQ6W2J9 1755 aa21.33■■□□□ 1
TRIM28-206ENST00000595974 UTRNP46939 3433 aa21.32■■□□□ 1
TRIM28-206ENST00000595974 C10orf71Q711Q0 1435 aa21.32■■□□□ 1
TRIM28-206ENST00000595974 A0A087WZG4 1122 aa21.32■■□□□ 1
TRIM28-206ENST00000595974 IL6STP40189 918 aaPredicted RBP21.32■■□□□ 1
TRIM28-206ENST00000595974 KIAA1551Q9HCM1 1747 aa21.32■■□□□ 1
TRIM28-206ENST00000595974 ANP32CO43423 234 aa21.31■■□□□ 1
TRIM28-206ENST00000595974 FKBP8Q14318 412 aa21.31■■□□□ 1
TRIM28-206ENST00000595974 USPL1Q5W0Q7 1092 aa21.31■■□□□ 1
TRIM28-206ENST00000595974 MIS18AQ9NYP9 233 aa21.31■■□□□ 1
TRIM28-206ENST00000595974 PARP3Q9Y6F1 533 aa21.31■■□□□ 1
TRIM28-206ENST00000595974 AFDNP55196 1824 aaKnown RBP21.31■■□□□ 1
TRIM28-206ENST00000595974 USP16Q9Y5T5 823 aa21.3■■□□□ 1
TRIM28-206ENST00000595974 NRXN2Q9P2S2 1712 aa21.29■■□□□ 1
TRIM28-206ENST00000595974 A1BGP04217 495 aa21.29■■□□□ 1
TRIM28-206ENST00000595974 BABAM1Q9NWV8 329 aa21.29■■□□□ 1
TRIM28-206ENST00000595974 RRP7AQ9Y3A4 280 aaKnown RBP21.29■■□□□ 1
TRIM28-206ENST00000595974 N4BP2Q86UW6 1770 aaPredicted RBP21.28■■□□□ 1
TRIM28-206ENST00000595974 PRAMEF22A3QJZ6 481 aa21.28■■□□□ 1
TRIM28-206ENST00000595974 GPR162Q16538 588 aa21.28■■□□□ 1
TRIM28-206ENST00000595974 NPM2Q86SE8 214 aaKnown RBP21.28■■□□□ 1
TRIM28-206ENST00000595974 EIF4A1P60842 406 aaKnown RBP21.27■■□□□ 1
TRIM28-206ENST00000595974 NEUROD2Q15784 382 aa21.27■■□□□ 1
TRIM28-206ENST00000595974 TSPYL4Q9UJ04 414 aa21.27■■□□□ 1
TRIM28-206ENST00000595974 ZNF330Q9Y3S2 320 aaPredicted RBP21.27■■□□□ 1
TRIM28-206ENST00000595974 BRCA1P38398 1863 aaKnown RBP21.26■□□□□ 0.99
TRIM28-206ENST00000595974 DDR1Q08345 913 aa21.26■□□□□ 0.99
TRIM28-206ENST00000595974 BCL2L12Q9HB09 334 aa21.26■□□□□ 0.99
TRIM28-206ENST00000595974 PXDNLA1KZ92 1463 aa21.26■□□□□ 0.99
TRIM28-206ENST00000595974 POLRMTO00411 1230 aaKnown RBP21.25■□□□□ 0.99
TRIM28-206ENST00000595974 GIGYF1O75420 1035 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-206ENST00000595974 TM4SF1P30408 202 aa21.25■□□□□ 0.99
TRIM28-206ENST00000595974 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
TRIM28-206ENST00000595974 TRIM35Q9UPQ4 493 aa21.25■□□□□ 0.99
TRIM28-206ENST00000595974 CCDC184Q52MB2 194 aa21.24■□□□□ 0.99
TRIM28-206ENST00000595974 TGFB2P61812 414 aa21.23■□□□□ 0.99
TRIM28-206ENST00000595974 NFIXQ14938 502 aa21.23■□□□□ 0.99
TRIM28-206ENST00000595974 YBX3P16989 372 aaKnown RBP eCLIP21.22■□□□□ 0.992e-27■□□□□ 9.3
TRIM28-206ENST00000595974 PIP4K2AP48426 406 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-206ENST00000595974 DZIP3Q86Y13 1208 aaKnown RBP21.22■□□□□ 0.99
TRIM28-206ENST00000595974 MRS2Q9HD23 443 aa21.22■□□□□ 0.99
TRIM28-206ENST00000595974 TBC1D2BQ9UPU7 963 aa21.22■□□□□ 0.99
TRIM28-206ENST00000595974 NBPF26B4DH59 902 aa21.21■□□□□ 0.99
TRIM28-206ENST00000595974 APAF1O14727 1248 aa21.21■□□□□ 0.99
TRIM28-206ENST00000595974 GRIN3BO60391 1043 aa21.21■□□□□ 0.99
TRIM28-206ENST00000595974 CAMTA2O94983 1202 aa21.21■□□□□ 0.99
TRIM28-206ENST00000595974 YY1P25490 414 aa21.21■□□□□ 0.99
TRIM28-206ENST00000595974 NBPF10Q6P3W6 841 aaKnown RBP21.21■□□□□ 0.99
TRIM28-206ENST00000595974 NBPF15Q8N660 670 aa21.21■□□□□ 0.99
TRIM28-206ENST00000595974 DLEC1Q9Y238 1755 aa21.2■□□□□ 0.98
TRIM28-206ENST00000595974 CHL1O00533 1208 aa21.19■□□□□ 0.98
TRIM28-206ENST00000595974 ARFGEF1Q9Y6D6 1849 aa21.19■□□□□ 0.98
TRIM28-206ENST00000595974 ERBB4Q15303 1308 aa21.19■□□□□ 0.98
TRIM28-206ENST00000595974 CARMIL3Q8ND23 1372 aa21.19■□□□□ 0.98
TRIM28-206ENST00000595974 RGL2O15211 777 aa21.18■□□□□ 0.98
TRIM28-206ENST00000595974 TBC1D9BQ66K14 1250 aa21.18■□□□□ 0.98
TRIM28-206ENST00000595974 NUP98P52948 1817 aa21.18■□□□□ 0.98
TRIM28-206ENST00000595974 SERPINB2P05120 415 aa21.17■□□□□ 0.98
TRIM28-206ENST00000595974 CLEC4GQ6UXB4 293 aa21.17■□□□□ 0.98
TRIM28-206ENST00000595974 ZNF652Q9Y2D9 606 aa21.17■□□□□ 0.98
TRIM28-206ENST00000595974 ANKRD31Q8N7Z5 1873 aa21.17■□□□□ 0.98
TRIM28-206ENST00000595974 CALD1Q05682 793 aaKnown RBP21.16■□□□□ 0.98
TRIM28-206ENST00000595974 BICDL1Q6ZP65 573 aa21.16■□□□□ 0.98
TRIM28-206ENST00000595974 A0A0G2JLW4 131 aa21.15■□□□□ 0.98
TRIM28-206ENST00000595974 DPEP1P16444 411 aa21.15■□□□□ 0.98
TRIM28-206ENST00000595974 CFAP44Q96MT7 982 aa21.15■□□□□ 0.98
TRIM28-206ENST00000595974 LAS1LQ9Y4W2 734 aaKnown RBP21.15■□□□□ 0.98
TRIM28-206ENST00000595974 SETDB2Q96T68 719 aa21.13■□□□□ 0.97
TRIM28-206ENST00000595974 WWC3Q9ULE0 1092 aa21.13■□□□□ 0.97
TRIM28-206ENST00000595974 HOXB7P09629 217 aa21.12■□□□□ 0.97
TRIM28-206ENST00000595974 IFT57Q9NWB7 429 aa21.12■□□□□ 0.97
TRIM28-206ENST00000595974 ZNF853P0CG23 659 aa21.11■□□□□ 0.97
TRIM28-206ENST00000595974 MYL6BP14649 208 aa21.11■□□□□ 0.97
TRIM28-206ENST00000595974 GNAI1P63096 354 aa21.11■□□□□ 0.97
TRIM28-206ENST00000595974 COL11A2P13942 1736 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-206ENST00000595974 MAP3K15Q6ZN16 1313 aa21.1■□□□□ 0.97
TRIM28-206ENST00000595974 ERVV-1B6SEH8 477 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms