RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 GPR162Q16538 588 aa23.45■■□□□ 1.34
SHKBP1-204ENST00000594862 NLGN2Q8NFZ4 835 aa23.45■■□□□ 1.34
SHKBP1-204ENST00000594862 PNISRQ8TF01 805 aaKnown RBP23.45■■□□□ 1.34
SHKBP1-204ENST00000594862 PRKRIP1Q9H875 184 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-204ENST00000594862 ZPR1O75312 459 aa23.44■■□□□ 1.34
SHKBP1-204ENST00000594862 A0A087WZG4 1122 aa23.43■■□□□ 1.34
SHKBP1-204ENST00000594862 WDR43Q15061 677 aaKnown RBP eCLIP23.43■■□□□ 1.34
SHKBP1-204ENST00000594862 ZBTB1Q9Y2K1 713 aa23.43■■□□□ 1.34
SHKBP1-204ENST00000594862 KIF13BQ9NQT8 1826 aa23.43■■□□□ 1.34
SHKBP1-204ENST00000594862 TAF7Q15545 349 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-204ENST00000594862 PARP3Q9Y6F1 533 aa23.42■■□□□ 1.34
SHKBP1-204ENST00000594862 LMOD3Q0VAK6 560 aa23.41■■□□□ 1.34
SHKBP1-204ENST00000594862 NARFQ9UHQ1 456 aa23.41■■□□□ 1.34
SHKBP1-204ENST00000594862 C10orf71Q711Q0 1435 aa23.41■■□□□ 1.34
SHKBP1-204ENST00000594862 GRIN3BO60391 1043 aa23.4■■□□□ 1.34
SHKBP1-204ENST00000594862 DCTN1Q14203 1278 aa23.4■■□□□ 1.34
SHKBP1-204ENST00000594862 NPM2Q86SE8 214 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-204ENST00000594862 SNRPA1P09661 255 aaKnown RBP23.39■■□□□ 1.33
SHKBP1-204ENST00000594862 IL6STP40189 918 aaPredicted RBP23.39■■□□□ 1.33
SHKBP1-204ENST00000594862 PELP1Q8IZL8 1130 aaKnown RBP23.39■■□□□ 1.33
SHKBP1-204ENST00000594862 KDM3BQ7LBC6 1761 aa23.39■■□□□ 1.33
SHKBP1-204ENST00000594862 CANXP27824 592 aaKnown RBP23.38■■□□□ 1.33
SHKBP1-204ENST00000594862 SRP68Q9UHB9 627 aaKnown RBP23.38■■□□□ 1.33
SHKBP1-204ENST00000594862 EIF5P55010 431 aaKnown RBP23.37■■□□□ 1.33
SHKBP1-204ENST00000594862 SCN7AQ01118 1682 aa23.37■■□□□ 1.33
SHKBP1-204ENST00000594862 LAMB4A4D0S4 1761 aa23.37■■□□□ 1.33
SHKBP1-204ENST00000594862 ZNF316A6NFI3 1004 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-204ENST00000594862 TGFB2P61812 414 aa23.36■■□□□ 1.33
SHKBP1-204ENST00000594862 FKBP8Q14318 412 aa23.36■■□□□ 1.33
SHKBP1-204ENST00000594862 USPL1Q5W0Q7 1092 aa23.36■■□□□ 1.33
SHKBP1-204ENST00000594862 KCNQ3O43525 872 aa23.35■■□□□ 1.33
SHKBP1-204ENST00000594862 RIPK4P57078 832 aa23.34■■□□□ 1.33
SHKBP1-204ENST00000594862 RUNDC1Q96C34 613 aa23.34■■□□□ 1.33
SHKBP1-204ENST00000594862 PXDNLA1KZ92 1463 aa23.33■■□□□ 1.33
SHKBP1-204ENST00000594862 C1QTNF8P60827 252 aa23.33■■□□□ 1.33
SHKBP1-204ENST00000594862 BABAM1Q9NWV8 329 aa23.33■■□□□ 1.33
SHKBP1-204ENST00000594862 TM4SF1P30408 202 aa23.32■■□□□ 1.32
SHKBP1-204ENST00000594862 TMPOP42166 694 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-204ENST00000594862 KIAA1551Q9HCM1 1747 aa23.32■■□□□ 1.32
SHKBP1-204ENST00000594862 YBX3P16989 372 aaKnown RBP eCLIP23.31■■□□□ 1.32
SHKBP1-204ENST00000594862 DDR1Q08345 913 aa23.31■■□□□ 1.32
SHKBP1-204ENST00000594862 POLRMTO00411 1230 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-204ENST00000594862 ZNF330Q9Y3S2 320 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-204ENST00000594862 BCORQ6W2J9 1755 aa23.29■■□□□ 1.32
SHKBP1-204ENST00000594862 A1BGP04217 495 aa23.29■■□□□ 1.32
SHKBP1-204ENST00000594862 NRXN2Q9P2S2 1712 aa23.29■■□□□ 1.32
SHKBP1-204ENST00000594862 USP16Q9Y5T5 823 aa23.29■■□□□ 1.32
SHKBP1-204ENST00000594862 RGL2O15211 777 aa23.28■■□□□ 1.32
SHKBP1-204ENST00000594862 NFIXQ14938 502 aa23.28■■□□□ 1.32
SHKBP1-204ENST00000594862 THUMPD2Q9BTF0 503 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-204ENST00000594862 ADAMTS8Q9UP79 889 aa23.28■■□□□ 1.32
SHKBP1-204ENST00000594862 CCDC146Q8IYE0 955 aa23.27■■□□□ 1.32
SHKBP1-204ENST00000594862 BCL2L12Q9HB09 334 aa23.27■■□□□ 1.32
SHKBP1-204ENST00000594862 MIS18AQ9NYP9 233 aa23.27■■□□□ 1.32
SHKBP1-204ENST00000594862 N4BP2Q86UW6 1770 aaPredicted RBP23.27■■□□□ 1.32
SHKBP1-204ENST00000594862 EIF4A1P60842 406 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-204ENST00000594862 TSPYL4Q9UJ04 414 aa23.26■■□□□ 1.31
SHKBP1-204ENST00000594862 ZNF652Q9Y2D9 606 aa23.26■■□□□ 1.31
SHKBP1-204ENST00000594862 AFDNP55196 1824 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-204ENST00000594862 SENP3-EIF4A1A0A087X0R7 540 aa23.25■■□□□ 1.31
SHKBP1-204ENST00000594862 GIGYF1O75420 1035 aaPredicted RBP23.25■■□□□ 1.31
SHKBP1-204ENST00000594862 DZIP3Q86Y13 1208 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-204ENST00000594862 TBC1D2BQ9UPU7 963 aa23.25■■□□□ 1.31
SHKBP1-204ENST00000594862 BRCA1P38398 1863 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-204ENST00000594862 CARMIL3Q8ND23 1372 aa23.25■■□□□ 1.31
SHKBP1-204ENST00000594862 PRAMEF22A3QJZ6 481 aa23.24■■□□□ 1.31
SHKBP1-204ENST00000594862 CEP350Q5VT06 3117 aa23.24■■□□□ 1.31
SHKBP1-204ENST00000594862 ERBB4Q15303 1308 aa23.24■■□□□ 1.31
SHKBP1-204ENST00000594862 ANP32CO43423 234 aa23.23■■□□□ 1.31
SHKBP1-204ENST00000594862 SERPINB2P05120 415 aa23.23■■□□□ 1.31
SHKBP1-204ENST00000594862 CLEC4GQ6UXB4 293 aa23.23■■□□□ 1.31
SHKBP1-204ENST00000594862 A0A0G2JLW4 131 aa23.22■■□□□ 1.31
SHKBP1-204ENST00000594862 CAMTA2O94983 1202 aa23.22■■□□□ 1.31
SHKBP1-204ENST00000594862 DPEP1P16444 411 aa23.22■■□□□ 1.31
SHKBP1-204ENST00000594862 RRP7AQ9Y3A4 280 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-204ENST00000594862 NEUROD2Q15784 382 aa23.21■■□□□ 1.31
SHKBP1-204ENST00000594862 PIM2Q9P1W9 311 aa23.21■■□□□ 1.31
SHKBP1-204ENST00000594862 PDZRN3Q9UPQ7 1066 aa23.21■■□□□ 1.31
SHKBP1-204ENST00000594862 ARFGEF1Q9Y6D6 1849 aa23.2■■□□□ 1.3
SHKBP1-204ENST00000594862 TBC1D9BQ66K14 1250 aa23.2■■□□□ 1.3
SHKBP1-204ENST00000594862 SETDB2Q96T68 719 aa23.2■■□□□ 1.3
SHKBP1-204ENST00000594862 NBPF26B4DH59 902 aa23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 CALD1Q05682 793 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 NBPF10Q6P3W6 841 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 BICDL1Q6ZP65 573 aa23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 NBPF15Q8N660 670 aa23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 BCS1LQ9Y276 419 aa23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 DLEC1Q9Y238 1755 aa23.19■■□□□ 1.3
SHKBP1-204ENST00000594862 TRIM35Q9UPQ4 493 aa23.18■■□□□ 1.3
SHKBP1-204ENST00000594862 PIP4K2AP48426 406 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-204ENST00000594862 DALRD3Q5D0E6 543 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-204ENST00000594862 CHL1O00533 1208 aa23.16■■□□□ 1.3
SHKBP1-204ENST00000594862 NPHP1O15259 732 aa23.16■■□□□ 1.3
SHKBP1-204ENST00000594862 WWC3Q9ULE0 1092 aa23.16■■□□□ 1.3
SHKBP1-204ENST00000594862 KCNA3P22001 575 aa23.15■■□□□ 1.3
SHKBP1-204ENST00000594862 ST5P78524 1137 aa23.15■■□□□ 1.3
SHKBP1-204ENST00000594862 KIF6Q6ZMV9 814 aa23.15■■□□□ 1.3
SHKBP1-204ENST00000594862 CNBD1Q8NA66 436 aa23.15■■□□□ 1.3
SHKBP1-204ENST00000594862 ERVV-1B6SEH8 477 aa23.14■■□□□ 1.29
SHKBP1-204ENST00000594862 PDE6BP35913 854 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms