RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	PIBF1	Q8WXW3	757 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	NUDT16	Q96DE0	195 aa	Known RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	SPATA32	Q96LK8	384 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	PLEKHF1	Q96S99	279 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	AATK	Q6ZMQ8	1374 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	TTC41P	Q6P2S7	1318 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	TTC21A	Q8NDW8	1320 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	CPSF1	Q10570	1443 aa	Known RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	SMTNL1	A8MU46	457 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	STK25	O00506	426 aa		4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	HMGB1	P09429	215 aa	Known RBP	4.18	□□□□□ -1.74
VMP1-216	ENST00000592790	HDGFL1	Q5TGJ6	251 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	TEX2	Q8IWB9	1127 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	OSCAR	Q8IYS5	282 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	JMY	Q8N9B5	988 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	FAM200A	Q8TCP9	573 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	OSBPL3	Q9H4L5	887 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	TNN	Q9UQP3	1299 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	NEO1	Q92859	1461 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	RAD50	Q92878	1312 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ARHGAP31	Q2M1Z3	1444 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	YEATS2	Q9ULM3	1422 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	HECW2	Q9P2P5	1572 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	MLH3	Q9UHC1	1453 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	GNAT3	A8MTJ3	354 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	IGSF3	O75054	1194 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ATP8B2	P98198	1209 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	IDI1	Q13907	227 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ATL3	Q6DD88	541 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	HOMER1	Q86YM7	354 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	KIF18A	Q8NI77	898 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ZNF592	Q92610	1267 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ERCC4	Q92889	916 aa	Predicted RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ANO10	Q9NW15	660 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	POLK	Q9UBT6	870 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	DEPDC5	O75140	1603 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	NRXN1	Q9ULB1	1477 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	ARHGEF10	O15013	1369 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	BRD1	O95696	1058 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	TRIM29	Q14134	588 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	NKX1-1	Q15270	411 aa	Predicted RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	CCDC70	Q6NSX1	233 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	OLFM4	Q6UX06	510 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	SYNE3	Q6ZMZ3	975 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	EVI5L	Q96CN4	794 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	FSD1	Q9BTV5	496 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	RBSN	Q9H1K0	784 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	CALCOCO1	Q9P1Z2	691 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	PRDM4	Q9UKN5	801 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	POGZ	Q7Z3K3	1410 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	FRMPD1	Q5SYB0	1578 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	CDK12	Q9NYV4	1490 aa	Predicted RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	GOLGA6L9	A6NEM1	432 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	KDM4A	O75164	1064 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	F13A1	P00488	732 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	CAST	P20810	708 aa	Known RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	PTPN14	Q15678	1187 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	SIRT1	Q96EB6	747 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	AK7	Q96M32	723 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	JAKMIP1	Q96N16	626 aa	Known RBP	4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	SDF4	Q9BRK5	362 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	DACH1	Q9UI36	760 aa		4.17	□□□□□ -1.74
VMP1-216	ENST00000592790	GLI2	P10070	1586 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	INO80	Q9ULG1	1556 aa	Predicted RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	SOX12	O15370	315 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	SRGAP3	O43295	1099 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	TUBB4B	P68371	445 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	SYCP1	Q15431	976 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	TAF7	Q15545	349 aa	Predicted RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	UTP14C	Q5TAP6	766 aa	Known RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	VPS53	Q5VIR6	699 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	FILIP1	Q7Z7B0	1213 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	USP48	Q86UV5	1035 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	ANKRD20A12P	Q8NF67	263 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	RGS12	O14924	1447 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	NPHP3	Q7Z494	1330 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	ZBTB7C	A1YPR0	619 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	CPLX1	O14810	134 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	FLII	Q13045	1269 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	STX1A	Q16623	288 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	GORAB	Q5T7V8	394 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	RBM27	Q9P2N5	1060 aa	Known RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	EXOC6B	Q9Y2D4	811 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	RTL1	A6NKG5	1358 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	MSH6	P52701	1360 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	UGGT1	Q9NYU2	1555 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	SMARCA5	O60264	1052 aa	Predicted RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	CHML	P26374	656 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	PIP4K2A	P48426	406 aa	Predicted RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	GABPB1	Q06547	395 aa	Predicted RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	CCDC150	Q8NCX0	1101 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	PDLIM2	Q96JY6	352 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	NOL10	Q9BSC4	688 aa	Known RBP	4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	ECHDC1	Q9NTX5	307 aa		4.16	□□□□□ -1.74
VMP1-216	ENST00000592790	OGFR	Q9NZT2	677 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 71 ms