RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ATF7IPQ6VMQ6 1270 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 ITPRIPQ8IWB1 547 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 IL17REQ8NFR9 667 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 SSH1Q8WYL5 1049 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 MS4A3Q96HJ5 214 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 CRBNQ96SW2 442 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 SLC52A2Q9HAB3 445 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 DDX19BQ9UMR2 479 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 ZNF831Q5JPB2 1677 aa7.86□□□□□ -1.15
LIG3-206ENST00000586058 BTAF1O14981 1849 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 SPATA31A1Q5TZJ5 1347 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 VAMP4O75379 141 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 BRPF1P55201 1214 aaPredicted RBP7.85□□□□□ -1.15
LIG3-206ENST00000586058 DDB1Q16531 1140 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 HDGFL1Q5TGJ6 251 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 EXOC6Q8TAG9 804 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 DDX54Q8TDD1 881 aaKnown RBP7.85□□□□□ -1.15
LIG3-206ENST00000586058 ARHGAP45Q92619 1136 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 NUP188Q5SRE5 1749 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 BRWD3Q6RI45 1802 aa7.85□□□□□ -1.15
LIG3-206ENST00000586058 TJP1Q07157 1748 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 ERVV-2B6SEH9 535 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 MVPQ14764 893 aaKnown RBP7.84□□□□□ -1.15
LIG3-206ENST00000586058 UNC5CLQ8IV45 518 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 C8orf58Q8NAV2 365 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 CLUAP1Q96AJ1 413 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 FMNL2Q96PY5 1086 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 TSPYL2Q9H2G4 693 aaPredicted RBP7.84□□□□□ -1.15
LIG3-206ENST00000586058 LGR6Q9HBX8 967 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 TMOD3Q9NYL9 352 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 MIS18AQ9NYP9 233 aa7.84□□□□□ -1.15
LIG3-206ENST00000586058 NOB1Q9ULX3 412 aaKnown RBP7.84□□□□□ -1.15
LIG3-206ENST00000586058 COL5A3P25940 1745 aaPredicted RBP7.83□□□□□ -1.16
LIG3-206ENST00000586058 SPATA31A5Q5VU36 1347 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 SPATA31A7Q8IWB4 1347 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 POTEB2H3BUK9 544 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 CYP27B1O15528 508 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 DDX58O95786 925 aaKnown RBP7.83□□□□□ -1.16
LIG3-206ENST00000586058 TRIM27P14373 513 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 HSPA1LP34931 641 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 ZNF790Q6PG37 636 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 BARGINQ6ZT62 677 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 MRPL50Q8N5N7 158 aaKnown RBP7.83□□□□□ -1.16
LIG3-206ENST00000586058 TSPYL6Q8N831 410 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 USP21Q9UK80 565 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 COG6Q9Y2V7 657 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 MYH3P11055 1940 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 GLI3P10071 1580 aa7.83□□□□□ -1.16
LIG3-206ENST00000586058 AK9Q5TCS8 1911 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 EIF4A1P60842 406 aaKnown RBP7.82□□□□□ -1.16
LIG3-206ENST00000586058 FKBP5Q13451 457 aaPredicted RBP7.82□□□□□ -1.16
LIG3-206ENST00000586058 VPS72Q15906 364 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 B4GALNT3Q6L9W6 998 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 NFATC2IPQ8NCF5 419 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 PANK1Q8TE04 598 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 DBF4Q9UBU7 674 aaPredicted RBP7.82□□□□□ -1.16
LIG3-206ENST00000586058 TAF1LQ8IZX4 1826 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 KCPQ6ZWJ8 1503 aa7.82□□□□□ -1.16
LIG3-206ENST00000586058 ABCC4O15439 1325 aa7.81□□□□□ -1.16
LIG3-206ENST00000586058 LY75O60449 1722 aa7.81□□□□□ -1.16
LIG3-206ENST00000586058 NUP98P52948 1817 aa7.81□□□□□ -1.16
LIG3-206ENST00000586058 EIF2S2P20042 333 aaKnown RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 CCT4P50991 539 aaKnown RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 NKX1-1Q15270 411 aaPredicted RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 C20orf194Q5TEA3 1177 aa7.81□□□□□ -1.16
LIG3-206ENST00000586058 ASTLQ6HA08 431 aaPredicted RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 CENPQQ7L2Z9 268 aaPredicted RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 NPM2Q86SE8 214 aaKnown RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 SYTL4Q96C24 671 aaPredicted RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 TRPC5Q9UL62 973 aaPredicted RBP7.81□□□□□ -1.16
LIG3-206ENST00000586058 BCL9LQ86UU0 1499 aa7.81□□□□□ -1.16
LIG3-206ENST00000586058 AFF2P51816 1311 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 ERBB4Q15303 1308 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 BCORQ6W2J9 1755 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 TCERG1O14776 1098 aaKnown RBP7.8□□□□□ -1.16
LIG3-206ENST00000586058 SNRPA1P09661 255 aaKnown RBP7.8□□□□□ -1.16
LIG3-206ENST00000586058 FLIIQ13045 1269 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 KRT24Q2M2I5 525 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 NECTIN2Q92692 538 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 OTUD5Q96G74 571 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 RWDD1Q9H446 243 aaPredicted RBP7.8□□□□□ -1.16
LIG3-206ENST00000586058 HYPKQ9NX55 129 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 ZBTB47Q9UFB7 747 aaPredicted RBP7.8□□□□□ -1.16
LIG3-206ENST00000586058 HDAC5Q9UQL6 1122 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 HEG1Q9ULI3 1381 aa7.8□□□□□ -1.16
LIG3-206ENST00000586058 RREB1Q92766 1687 aa7.79□□□□□ -1.16
LIG3-206ENST00000586058 CASZ1Q86V15 1759 aa7.79□□□□□ -1.16
LIG3-206ENST00000586058 ATMINO43313 823 aaPredicted RBP7.79□□□□□ -1.16
LIG3-206ENST00000586058 NEXNQ0ZGT2 675 aa7.79□□□□□ -1.16
LIG3-206ENST00000586058 FAM98CQ17RN3 349 aaKnown RBP7.79□□□□□ -1.16
LIG3-206ENST00000586058 SLC4A10Q6U841 1118 aa7.79□□□□□ -1.16
LIG3-206ENST00000586058 FNBP4Q8N3X1 1017 aaPredicted RBP7.79□□□□□ -1.16
LIG3-206ENST00000586058 TMEM57Q8N5G2 664 aa7.79□□□□□ -1.16
LIG3-206ENST00000586058 TEX13AQ9BXU3 409 aaPredicted RBP7.79□□□□□ -1.16
LIG3-206ENST00000586058 LAMB2P55268 1798 aa7.79□□□□□ -1.16
LIG3-206ENST00000586058 BCL9O00512 1426 aa7.78□□□□□ -1.16
LIG3-206ENST00000586058 ATRNO75882 1429 aa7.78□□□□□ -1.16
LIG3-206ENST00000586058 GIGYF1O75420 1035 aaPredicted RBP7.78□□□□□ -1.16
LIG3-206ENST00000586058 SLC39A6Q13433 755 aa7.78□□□□□ -1.16
LIG3-206ENST00000586058 CHPF2Q9P2E5 772 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms