RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 C21orf2O43822 256 aa8.68□□□□□ -1.02
SMCHD1-204ENST00000581226 GAS2L2Q8NHY3 880 aa8.68□□□□□ -1.02
SMCHD1-204ENST00000581226 AIDAQ96BJ3 306 aa8.68□□□□□ -1.02
SMCHD1-204ENST00000581226 USTQ9Y2C2 406 aa8.68□□□□□ -1.02
SMCHD1-204ENST00000581226 PARP3Q9Y6F1 533 aa8.68□□□□□ -1.02
SMCHD1-204ENST00000581226 SERTM1A2A2V5 107 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 IGFBP4P22692 258 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 WEE1P30291 646 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 NOS2P35228 1153 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 PSMA6P60900 246 aaKnown RBP8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 TEAD4Q15561 434 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 ZNF295-AS1Q8N0V1 137 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 CLP1Q92989 425 aaKnown RBP8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 L3MBTL2Q969R5 705 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 STK17AQ9UEE5 414 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 ZNF232Q9UNY5 417 aa8.67□□□□□ -1.02
SMCHD1-204ENST00000581226 SLC35F4A4IF30 521 aa8.66□□□□□ -1.02
SMCHD1-204ENST00000581226 PDE4CQ08493 712 aa8.66□□□□□ -1.02
SMCHD1-204ENST00000581226 NFX1Q12986 1120 aaKnown RBP8.66□□□□□ -1.02
SMCHD1-204ENST00000581226 CCDC155Q8N6L0 562 aa8.66□□□□□ -1.02
SMCHD1-204ENST00000581226 ZDHHC1Q8WTX9 485 aa8.66□□□□□ -1.02
SMCHD1-204ENST00000581226 SENP3-EIF4A1A0A087X0R7 540 aa8.65□□□□□ -1.02
SMCHD1-204ENST00000581226 A0A1B0GTH6 734 aa8.65□□□□□ -1.02
SMCHD1-204ENST00000581226 GAS2L1Q99501 681 aaPredicted RBP8.65□□□□□ -1.02
SMCHD1-204ENST00000581226 SLAIN2Q9P270 581 aa8.65□□□□□ -1.02
SMCHD1-204ENST00000581226 DYRK1BQ9Y463 629 aa8.65□□□□□ -1.02
SMCHD1-204ENST00000581226 ATP2B4P23634 1241 aa8.64□□□□□ -1.03
SMCHD1-204ENST00000581226 INSM1Q01101 510 aaPredicted RBP8.64□□□□□ -1.03
SMCHD1-204ENST00000581226 OCLNQ16625 522 aa8.64□□□□□ -1.03
SMCHD1-204ENST00000581226 NBPF1Q3BBV0 1214 aa8.64□□□□□ -1.03
SMCHD1-204ENST00000581226 STAG2Q8N3U4 1231 aa8.64□□□□□ -1.03
SMCHD1-204ENST00000581226 EML1O00423 815 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 F11P03951 625 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 MSX1P28360 303 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 SH3PXD2AQ5TCZ1 1133 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 RIPOR1Q6ZS17 1223 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 VTI1AQ96AJ9 217 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 C2orf49Q9BVC5 232 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 CXXC1Q9P0U4 656 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 HCN4Q9Y3Q4 1203 aa8.63□□□□□ -1.03
SMCHD1-204ENST00000581226 WIPF1O43516 503 aa8.62□□□□□ -1.03
SMCHD1-204ENST00000581226 FOXO3O43524 673 aa8.62□□□□□ -1.03
SMCHD1-204ENST00000581226 TATP17735 454 aaPredicted RBP8.62□□□□□ -1.03
SMCHD1-204ENST00000581226 TXLNAP40222 546 aa8.62□□□□□ -1.03
SMCHD1-204ENST00000581226 GPAMQ9HCL2 828 aa8.62□□□□□ -1.03
SMCHD1-204ENST00000581226 PPFIA3O75145 1194 aa8.61□□□□□ -1.03
SMCHD1-204ENST00000581226 HIRAP54198 1017 aaPredicted RBP8.61□□□□□ -1.03
SMCHD1-204ENST00000581226 FKBP5Q13451 457 aaPredicted RBP8.61□□□□□ -1.03
SMCHD1-204ENST00000581226 C1orf216Q8TAB5 229 aa8.61□□□□□ -1.03
SMCHD1-204ENST00000581226 NGLY1Q96IV0 654 aa8.61□□□□□ -1.03
SMCHD1-204ENST00000581226 SSFA2P28290 1259 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 VEGFBP49765 207 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 POTEAQ6S8J7 498 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 PGBD3Q8N328 593 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 MKNK1Q9BUB5 465 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 PHACTR1Q9C0D0 580 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 ZDHHC3Q9NYG2 299 aa8.6□□□□□ -1.03
SMCHD1-204ENST00000581226 ITGA6P23229 1130 aa8.59□□□□□ -1.03
SMCHD1-204ENST00000581226 ARSJQ5FYB0 599 aaPredicted RBP8.59□□□□□ -1.03
SMCHD1-204ENST00000581226 BICDL1Q6ZP65 573 aa8.59□□□□□ -1.03
SMCHD1-204ENST00000581226 ALDH16A1Q8IZ83 802 aa8.59□□□□□ -1.03
SMCHD1-204ENST00000581226 RUBCNLQ9H714 662 aa8.59□□□□□ -1.03
SMCHD1-204ENST00000581226 H7C1W4 665 aa8.58□□□□□ -1.04
SMCHD1-204ENST00000581226 ATP4AP20648 1035 aa8.58□□□□□ -1.04
SMCHD1-204ENST00000581226 C1orf53Q5VUE5 145 aa8.58□□□□□ -1.04
SMCHD1-204ENST00000581226 TERTO14746 1132 aaKnown RBP8.57□□□□□ -1.04
SMCHD1-204ENST00000581226 PTCD1O75127 700 aaKnown RBP8.57□□□□□ -1.04
SMCHD1-204ENST00000581226 B4GALNT3Q6L9W6 998 aa8.57□□□□□ -1.04
SMCHD1-204ENST00000581226 NPAS3Q8IXF0 933 aa8.57□□□□□ -1.04
SMCHD1-204ENST00000581226 RHPN1Q8TCX5 695 aa8.57□□□□□ -1.04
SMCHD1-204ENST00000581226 CUEDC1Q9NWM3 386 aaPredicted RBP8.57□□□□□ -1.04
SMCHD1-204ENST00000581226 A0A1W2PNR3 127 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 CDC14CA4D256 554 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 DBN1Q16643 649 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 EFHC2Q5JST6 749 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 LCE2CQ5TA81 110 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 PHLDB3Q6NSJ2 640 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 CAPN12Q6ZSI9 719 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 TRIM22Q8IYM9 498 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 COL26A1Q96A83 441 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 ZIC5Q96T25 663 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 NUCKS1Q9H1E3 243 aaKnown RBP8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 NEUROD4Q9HD90 331 aa8.56□□□□□ -1.04
SMCHD1-204ENST00000581226 H3BM21 787 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 PDIA4P13667 645 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 SCNN1AP37088 669 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 NAA30Q147X3 362 aaPredicted RBP8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 VWA5B2Q8N398 1253 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 SLC16A10Q8TF71 515 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 GMCL1Q96IK5 515 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 CRISPLD1Q9H336 500 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 GJA3Q9Y6H8 435 aa8.55□□□□□ -1.04
SMCHD1-204ENST00000581226 LBRQ14739 615 aaKnown RBP8.54□□□□□ -1.04
SMCHD1-204ENST00000581226 RTN1Q16799 776 aa8.54□□□□□ -1.04
SMCHD1-204ENST00000581226 SV2AQ7L0J3 742 aa8.54□□□□□ -1.04
SMCHD1-204ENST00000581226 C7orf43Q8WVR3 580 aa8.54□□□□□ -1.04
SMCHD1-204ENST00000581226 TRAIPQ9BWF2 469 aa8.54□□□□□ -1.04
SMCHD1-204ENST00000581226 QTRT2Q9H974 415 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms