RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 FLIIQ13045 1269 aa19.43■□□□□ 0.7
SS18-215ENST00000580642 CHPF2Q9P2E5 772 aa19.43■□□□□ 0.7
SS18-215ENST00000580642 ZNF831Q5JPB2 1677 aa19.43■□□□□ 0.7
SS18-215ENST00000580642 KCNQ2O43526 872 aa19.42■□□□□ 0.7
SS18-215ENST00000580642 POTEAQ6S8J7 498 aa19.42■□□□□ 0.7
SS18-215ENST00000580642 USP16Q9Y5T5 823 aa19.42■□□□□ 0.7
SS18-215ENST00000580642 CICQ96RK0 1608 aaPredicted RBP19.42■□□□□ 0.7
SS18-215ENST00000580642 ABCC4O15439 1325 aa19.42■□□□□ 0.7
SS18-215ENST00000580642 PALLDQ8WX93 1383 aa19.42■□□□□ 0.7
SS18-215ENST00000580642 LAMB4A4D0S4 1761 aa19.42■□□□□ 0.7
SS18-215ENST00000580642 LOC102724428A0A0B4J2F2 783 aa19.41■□□□□ 0.7
SS18-215ENST00000580642 SIK1P57059 783 aa19.41■□□□□ 0.7
SS18-215ENST00000580642 PDIA6Q15084 440 aa19.41■□□□□ 0.7
SS18-215ENST00000580642 RBM42Q9BTD8 480 aaKnown RBP19.41■□□□□ 0.7
SS18-215ENST00000580642 PRAMEF22A3QJZ6 481 aa19.4■□□□□ 0.7
SS18-215ENST00000580642 TCERG1O14776 1098 aaKnown RBP19.4■□□□□ 0.7
SS18-215ENST00000580642 DDX58O95786 925 aaKnown RBP19.4■□□□□ 0.7
SS18-215ENST00000580642 DDX19BQ9UMR2 479 aa19.4■□□□□ 0.7
SS18-215ENST00000580642 RGS12O14924 1447 aa19.4■□□□□ 0.7
SS18-215ENST00000580642 MVPQ14764 893 aaKnown RBP19.39■□□□□ 0.69
SS18-215ENST00000580642 C20orf194Q5TEA3 1177 aa19.39■□□□□ 0.69
SS18-215ENST00000580642 INTS3Q68E01 1043 aaKnown RBP19.39■□□□□ 0.69
SS18-215ENST00000580642 PXDNLA1KZ92 1463 aa19.38■□□□□ 0.69
SS18-215ENST00000580642 CCT4P50991 539 aaKnown RBP19.38■□□□□ 0.69
SS18-215ENST00000580642 FKBP5Q13451 457 aaPredicted RBP19.38■□□□□ 0.69
SS18-215ENST00000580642 NECTIN2Q92692 538 aa19.38■□□□□ 0.69
SS18-215ENST00000580642 IBTKQ9P2D0 1353 aaPredicted RBP19.38■□□□□ 0.69
SS18-215ENST00000580642 C5P01031 1676 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 CYP19A1P11511 503 aaPredicted RBP19.37■□□□□ 0.69
SS18-215ENST00000580642 G2E3Q7L622 706 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 LRP10Q7Z4F1 713 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 DNAJC10Q8IXB1 793 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 PANK1Q8TE04 598 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 SLC4A9Q96Q91 983 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 CRBNQ96SW2 442 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 PPP4R2Q9NY27 417 aa19.37■□□□□ 0.69
SS18-215ENST00000580642 RLBP1P12271 317 aa19.36■□□□□ 0.69
SS18-215ENST00000580642 ATP6V1AP38606 617 aa19.36■□□□□ 0.69
SS18-215ENST00000580642 IRX6P78412 446 aaPredicted RBP19.36■□□□□ 0.69
SS18-215ENST00000580642 BRWD3Q6RI45 1802 aa19.35■□□□□ 0.69
SS18-215ENST00000580642 KSR2Q6VAB6 950 aa19.35■□□□□ 0.69
SS18-215ENST00000580642 CLUAP1Q96AJ1 413 aa19.35■□□□□ 0.69
SS18-215ENST00000580642 PHAXQ9H814 394 aaKnown RBP19.35■□□□□ 0.69
SS18-215ENST00000580642 SBF2Q86WG5 1849 aa19.35■□□□□ 0.69
SS18-215ENST00000580642 FAM182BQ5T319 152 aa19.34■□□□□ 0.69
SS18-215ENST00000580642 TMEM57Q8N5G2 664 aa19.34■□□□□ 0.69
SS18-215ENST00000580642 EXOC6Q8TAG9 804 aa19.34■□□□□ 0.69
SS18-215ENST00000580642 COG6Q9Y2V7 657 aa19.34■□□□□ 0.69
SS18-215ENST00000580642 KAT6BQ8WYB5 2073 aa19.33■□□□□ 0.69
SS18-215ENST00000580642 NBPF26B4DH59 902 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 IL6STP40189 918 aaPredicted RBP19.33■□□□□ 0.68
SS18-215ENST00000580642 PROSER3Q2NL68 480 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 SLC27A3Q5K4L6 730 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 RC3H1Q5TC82 1133 aaKnown RBP19.33■□□□□ 0.68
SS18-215ENST00000580642 NBPF14Q5TI25 921 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 NBPF10Q6P3W6 841 aaKnown RBP19.33■□□□□ 0.68
SS18-215ENST00000580642 ITPRIPQ8IWB1 547 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 NBPF15Q8N660 670 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 DNAAF4Q8WXU2 420 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 ATP10DQ9P241 1426 aa19.33■□□□□ 0.68
SS18-215ENST00000580642 BTAF1O14981 1849 aa19.32■□□□□ 0.68
SS18-215ENST00000580642 PLSCR1O15162 318 aa19.32■□□□□ 0.68
SS18-215ENST00000580642 A1BGP04217 495 aa19.32■□□□□ 0.68
SS18-215ENST00000580642 CCDC87Q9NVE4 849 aa19.32■□□□□ 0.68
SS18-215ENST00000580642 CNTNAP4Q9C0A0 1308 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 PI4KAP2A4QPH2 592 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 RGL2O15211 777 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 MYL6BP14649 208 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 ANKRD13DQ6ZTN6 518 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 COPS6Q7L5N1 327 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 PI4KAP1Q8N8J0 262 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 PLBD2Q8NHP8 589 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 XAGE3Q8WTP9 111 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 TNNQ9UQP3 1299 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 TJP1Q07157 1748 aa19.31■□□□□ 0.68
SS18-215ENST00000580642 ITPK1Q13572 414 aa19.3■□□□□ 0.68
SS18-215ENST00000580642 NPM2Q86SE8 214 aaKnown RBP19.3■□□□□ 0.68
SS18-215ENST00000580642 ZBTB7BO15156 539 aaPredicted RBP19.29■□□□□ 0.68
SS18-215ENST00000580642 ALDH1L1O75891 902 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 TRIM37O94972 964 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 ANXA1P04083 346 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 PTF1AQ7RTS3 328 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 ZBTB40Q9NUA8 1239 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 CCNL1Q9UK58 526 aaPredicted RBP19.29■□□□□ 0.68
SS18-215ENST00000580642 HDAC5Q9UQL6 1122 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 ADCY9O60503 1353 aa19.29■□□□□ 0.68
SS18-215ENST00000580642 RREB1Q92766 1687 aa19.28■□□□□ 0.68
SS18-215ENST00000580642 CRKLP46109 303 aaKnown RBP19.28■□□□□ 0.68
SS18-215ENST00000580642 EIF5P55010 431 aaKnown RBP19.28■□□□□ 0.68
SS18-215ENST00000580642 NEXNQ0ZGT2 675 aa19.28■□□□□ 0.68
SS18-215ENST00000580642 INTS5Q6P9B9 1019 aaKnown RBP19.28■□□□□ 0.68
SS18-215ENST00000580642 RIC3Q7Z5B4 369 aa19.28■□□□□ 0.68
SS18-215ENST00000580642 LINS1Q8NG48 757 aa19.28■□□□□ 0.68
SS18-215ENST00000580642 SRCIN1Q9C0H9 1055 aa19.28■□□□□ 0.68
SS18-215ENST00000580642 LY75O60449 1722 aa19.28■□□□□ 0.68
SS18-215ENST00000580642 A0A087WZG4 1122 aa19.27■□□□□ 0.68
SS18-215ENST00000580642 F6X3S4 739 aa19.27■□□□□ 0.68
SS18-215ENST00000580642 BEND3Q5T5X7 828 aa19.27■□□□□ 0.68
SS18-215ENST00000580642 SLC4A10Q6U841 1118 aa19.27■□□□□ 0.68
SS18-215ENST00000580642 METTL22Q9BUU2 404 aaPredicted RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms