RNA–Protein interactions for RNA: ENST00000580127.5

MKS1-209, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5

Gene MKS1, Length 843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-209ENST00000580127 A0A087WZG4 1122 aa24.12■■□□□ 1.45
MKS1-209ENST00000580127 CHRNA5P30532 468 aa24.12■■□□□ 1.45
MKS1-209ENST00000580127 NPM2Q86SE8 214 aaKnown RBP24.12■■□□□ 1.45
MKS1-209ENST00000580127 TEX13AQ9BXU3 409 aaPredicted RBP24.12■■□□□ 1.45
MKS1-209ENST00000580127 BRCA1P38398 1863 aaKnown RBP24.12■■□□□ 1.45
MKS1-209ENST00000580127 TJP1Q07157 1748 aa24.11■■□□□ 1.45
MKS1-209ENST00000580127 PER1O15534 1290 aaPredicted RBP24.11■■□□□ 1.45
MKS1-209ENST00000580127 RBM46Q8TBY0 533 aaKnown RBP24.11■■□□□ 1.45
MKS1-209ENST00000580127 NMRK2Q9NPI5 230 aa24.11■■□□□ 1.45
MKS1-209ENST00000580127 RNF181Q9P0P0 153 aa24.11■■□□□ 1.45
MKS1-209ENST00000580127 TEFQ10587 303 aa24.1■■□□□ 1.45
MKS1-209ENST00000580127 NFIXQ14938 502 aa24.09■■□□□ 1.45
MKS1-209ENST00000580127 GAS2L2Q8NHY3 880 aa24.09■■□□□ 1.45
MKS1-209ENST00000580127 COL15A1P39059 1388 aa24.08■■□□□ 1.45
MKS1-209ENST00000580127 GNAT3A8MTJ3 354 aa24.08■■□□□ 1.45
MKS1-209ENST00000580127 U2SURPO15042 1029 aaKnown RBP24.08■■□□□ 1.45
MKS1-209ENST00000580127 SERPINB2P05120 415 aa24.08■■□□□ 1.45
MKS1-209ENST00000580127 CANXP27824 592 aaKnown RBP24.08■■□□□ 1.45
MKS1-209ENST00000580127 H0YIN7 160 aa24.07■■□□□ 1.44
MKS1-209ENST00000580127 FSTL1Q12841 308 aa24.07■■□□□ 1.44
MKS1-209ENST00000580127 ZBTB1Q9Y2K1 713 aa24.07■■□□□ 1.44
MKS1-209ENST00000580127 TTLL6Q8N841 843 aa24.06■■□□□ 1.44
MKS1-209ENST00000580127 PDZRN3Q9UPQ7 1066 aa24.06■■□□□ 1.44
MKS1-209ENST00000580127 MRC1P22897 1456 aa24.05■■□□□ 1.44
MKS1-209ENST00000580127 ZC3H4Q9UPT8 1303 aaKnown RBP24.05■■□□□ 1.44
MKS1-209ENST00000580127 VIRMAQ69YN4 1812 aaKnown RBP24.05■■□□□ 1.44
MKS1-209ENST00000580127 CFAP53Q96M91 514 aa24.04■■□□□ 1.44
MKS1-209ENST00000580127 NPC1L1Q9UHC9 1359 aa24.03■■□□□ 1.44
MKS1-209ENST00000580127 LMNB1P20700 586 aa24.03■■□□□ 1.44
MKS1-209ENST00000580127 ZNF790Q6PG37 636 aa24.03■■□□□ 1.44
MKS1-209ENST00000580127 C2CD5Q86YS7 1000 aa24.03■■□□□ 1.44
MKS1-209ENST00000580127 RRAGCQ9HB90 399 aa24.03■■□□□ 1.44
MKS1-209ENST00000580127 EIF5P55010 431 aaKnown RBP24.02■■□□□ 1.44
MKS1-209ENST00000580127 CNGB1Q14028 1251 aaPredicted RBP24.02■■□□□ 1.44
MKS1-209ENST00000580127 BICDL1Q6ZP65 573 aa24.01■■□□□ 1.43
MKS1-209ENST00000580127 NUDCQ9Y266 331 aa24.01■■□□□ 1.43
MKS1-209ENST00000580127 ADAMTS7Q9UKP4 1686 aa24.01■■□□□ 1.43
MKS1-209ENST00000580127 KCPQ6ZWJ8 1503 aa24■■□□□ 1.43
MKS1-209ENST00000580127 PDE6BP35913 854 aa24■■□□□ 1.43
MKS1-209ENST00000580127 FMNL2Q96PY5 1086 aa24■■□□□ 1.43
MKS1-209ENST00000580127 BCL2L12Q9HB09 334 aa24■■□□□ 1.43
MKS1-209ENST00000580127 SBF1O95248 1867 aa24■■□□□ 1.43
MKS1-209ENST00000580127 NPHP1O15259 732 aa23.99■■□□□ 1.43
MKS1-209ENST00000580127 DNAJC5GQ8N7S2 189 aa23.99■■□□□ 1.43
MKS1-209ENST00000580127 IL17REQ8NFR9 667 aa23.99■■□□□ 1.43
MKS1-209ENST00000580127 ZNF496Q96IT1 587 aaPredicted RBP23.99■■□□□ 1.43
MKS1-209ENST00000580127 ZNF330Q9Y3S2 320 aaPredicted RBP23.99■■□□□ 1.43
MKS1-209ENST00000580127 AFDNP55196 1824 aaKnown RBP23.98■■□□□ 1.43
MKS1-209ENST00000580127 IL6STP40189 918 aaPredicted RBP23.98■■□□□ 1.43
MKS1-209ENST00000580127 SMC1BQ8NDV3 1235 aa23.98■■□□□ 1.43
MKS1-209ENST00000580127 HEG1Q9ULI3 1381 aa23.98■■□□□ 1.43
MKS1-209ENST00000580127 VEGFAP15692 232 aaPredicted RBP23.97■■□□□ 1.43
MKS1-209ENST00000580127 DPY19L2Q6NUT2 758 aa23.97■■□□□ 1.43
MKS1-209ENST00000580127 BRIP1Q9BX63 1249 aa23.97■■□□□ 1.43
MKS1-209ENST00000580127 ZNF622Q969S3 477 aaKnown RBP eCLIP23.96■■□□□ 1.438e-7■■■□□ 15.6
MKS1-209ENST00000580127 SETDB2Q96T68 719 aa23.96■■□□□ 1.43
MKS1-209ENST00000580127 GLTPD2A6NH11 291 aa23.95■■□□□ 1.42
MKS1-209ENST00000580127 BTBD11A6QL63 1104 aa23.95■■□□□ 1.42
MKS1-209ENST00000580127 TBC1D2BQ9UPU7 963 aa23.95■■□□□ 1.42
MKS1-209ENST00000580127 UBR2Q8IWV8 1755 aa23.94■■□□□ 1.42
MKS1-209ENST00000580127 NRXN2Q9P2S2 1712 aa23.94■■□□□ 1.42
MKS1-209ENST00000580127 RASSF7Q02833 373 aa23.94■■□□□ 1.42
MKS1-209ENST00000580127 TBC1D9BQ66K14 1250 aa23.94■■□□□ 1.42
MKS1-209ENST00000580127 RTF1Q92541 710 aaKnown RBP23.94■■□□□ 1.42
MKS1-209ENST00000580127 TNRC6CQ9HCJ0 1690 aaKnown RBP23.92■■□□□ 1.42
MKS1-209ENST00000580127 CARMIL3Q8ND23 1372 aa23.92■■□□□ 1.42
MKS1-209ENST00000580127 PRKAR2BP31323 418 aa23.91■■□□□ 1.42
MKS1-209ENST00000580127 ST5P78524 1137 aa23.91■■□□□ 1.42
MKS1-209ENST00000580127 CNKSR1Q969H4 720 aa23.91■■□□□ 1.42
MKS1-209ENST00000580127 KLRG1Q96E93 195 aa23.91■■□□□ 1.42
MKS1-209ENST00000580127 A1BGP04217 495 aa23.9■■□□□ 1.42
MKS1-209ENST00000580127 SOGA3Q5TF21 947 aa23.89■■□□□ 1.41
MKS1-209ENST00000580127 PRR5LQ6MZQ0 368 aa23.89■■□□□ 1.41
MKS1-209ENST00000580127 CNBD1Q8NA66 436 aa23.89■■□□□ 1.41
MKS1-209ENST00000580127 ZNF652Q9Y2D9 606 aa23.89■■□□□ 1.41
MKS1-209ENST00000580127 CEMIPQ8WUJ3 1361 aa23.89■■□□□ 1.41
MKS1-209ENST00000580127 DLEC1Q9Y238 1755 aa23.88■■□□□ 1.41
MKS1-209ENST00000580127 C21orf2O43822 256 aa23.88■■□□□ 1.41
MKS1-209ENST00000580127 U2AF1L5P0DN76 240 aaPredicted RBP23.88■■□□□ 1.41
MKS1-209ENST00000580127 U2AF1Q01081 240 aaKnown RBP eCLIP23.88■■□□□ 1.41
MKS1-209ENST00000580127 CLEC4GQ6UXB4 293 aa23.88■■□□□ 1.41
MKS1-209ENST00000580127 DZIP3Q86Y13 1208 aaKnown RBP23.88■■□□□ 1.41
MKS1-209ENST00000580127 PHACTR3Q96KR7 559 aa23.88■■□□□ 1.41
MKS1-209ENST00000580127 COL3A1P02461 1466 aaPredicted RBP23.87■■□□□ 1.41
MKS1-209ENST00000580127 CCDC88AQ3V6T2 1871 aa23.87■■□□□ 1.41
MKS1-209ENST00000580127 WDR90Q96KV7 1748 aa23.87■■□□□ 1.41
MKS1-209ENST00000580127 SNRPA1P09661 255 aaKnown RBP23.87■■□□□ 1.41
MKS1-209ENST00000580127 ERFEQ4G0M1 354 aa23.87■■□□□ 1.41
MKS1-209ENST00000580127 NEFMP07197 916 aa23.86■■□□□ 1.41
MKS1-209ENST00000580127 STYK1Q6J9G0 422 aa23.86■■□□□ 1.41
MKS1-209ENST00000580127 RSPH6AQ9H0K4 717 aa23.86■■□□□ 1.41
MKS1-209ENST00000580127 NFKBIEO00221 500 aa23.85■■□□□ 1.41
MKS1-209ENST00000580127 HTATSF1O43719 755 aaKnown RBP23.85■■□□□ 1.41
MKS1-209ENST00000580127 CAMTA2O94983 1202 aa23.85■■□□□ 1.41
MKS1-209ENST00000580127 JMYQ8N9B5 988 aa23.85■■□□□ 1.41
MKS1-209ENST00000580127 ZNF219Q9P2Y4 722 aaPredicted RBP23.85■■□□□ 1.41
MKS1-209ENST00000580127 MASTLQ96GX5 879 aa23.84■■□□□ 1.41
MKS1-209ENST00000580127 USP16Q9Y5T5 823 aa23.84■■□□□ 1.41
MKS1-209ENST00000580127 SIPA1L3O60292 1781 aaPredicted RBP23.83■■□□□ 1.41
MKS1-209ENST00000580127 HTRA3P83110 453 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms