RNA–Protein interactions for RNA: ENST00000576932.5

TOM1L1-223, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 1 (best)

Gene TOM1L1, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-223	ENST00000576932	PCDH11X	Q9BZA7	1347 aa		13.1	□□□□□ -0.31
TOM1L1-223	ENST00000576932	PCDH11Y	Q9BZA8	1340 aa		13.1	□□□□□ -0.31
TOM1L1-223	ENST00000576932	KIF13B	Q9NQT8	1826 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	POTEI	P0CG38	1075 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	AMPH	P49418	695 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	TGFB2	P61812	414 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	E2F4	Q16254	413 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	TMC1	Q8TDI8	760 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	RAPGEF4	Q8WZA2	1011 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	SLC12A5	Q9H2X9	1139 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	GPHN	Q9NQX3	736 aa	Predicted RBP	13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	COLQ	Q9Y215	455 aa	Predicted RBP	13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	RGPD2	P0DJD1	1756 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	PXDNL	A1KZ92	1463 aa		13.09	□□□□□ -0.31
TOM1L1-223	ENST00000576932	AMIGO3	Q86WK7	504 aa		13.08	□□□□□ -0.32
TOM1L1-223	ENST00000576932	TNS4	Q8IZW8	715 aa		13.08	□□□□□ -0.32
TOM1L1-223	ENST00000576932	COG3	Q96JB2	828 aa		13.08	□□□□□ -0.32
TOM1L1-223	ENST00000576932	PLEKHG2	Q9H7P9	1386 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	C10orf71	Q711Q0	1435 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	SMG6	Q86US8	1419 aa	Known RBP	13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	TAT	P17735	454 aa	Predicted RBP	13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	NBPF6	Q5VWK0	638 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	NBPF4	Q96M43	638 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	NMRK2	Q9NPI5	230 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	WWC3	Q9ULE0	1092 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	KIAA1551	Q9HCM1	1747 aa		13.07	□□□□□ -0.32
TOM1L1-223	ENST00000576932	PHF14	O94880	888 aa		13.06	□□□□□ -0.32
TOM1L1-223	ENST00000576932	MFSD10	Q14728	455 aa		13.06	□□□□□ -0.32
TOM1L1-223	ENST00000576932	MPRIP	Q6WCQ1	1025 aa		13.06	□□□□□ -0.32
TOM1L1-223	ENST00000576932	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.06	□□□□□ -0.32
TOM1L1-223	ENST00000576932	MAP2	P11137	1827 aa	Known RBP	13.05	□□□□□ -0.32
TOM1L1-223	ENST00000576932	ITGB4	P16144	1822 aa		13.04	□□□□□ -0.32
TOM1L1-223	ENST00000576932	MMP10	P09238	476 aa		13.04	□□□□□ -0.32
TOM1L1-223	ENST00000576932	BCS1L	Q9Y276	419 aa		13.04	□□□□□ -0.32
TOM1L1-223	ENST00000576932	LOC102724428	A0A0B4J2F2	783 aa		13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	TULP1	O00294	542 aa	Predicted RBP	13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	CYP27B1	O15528	508 aa		13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	SIK1	P57059	783 aa		13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	PPP1R15B	Q5SWA1	713 aa		13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	KDM2B	Q8NHM5	1336 aa		13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	KIF24	Q5T7B8	1368 aa		13.03	□□□□□ -0.32
TOM1L1-223	ENST00000576932	ARHGAP27	Q6ZUM4	889 aa		13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	NLGN1	Q8N2Q7	840 aa		13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	LINC00116	Q8NCU8	138 aa		13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	PIGB	Q92521	554 aa		13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	ARHGEF1	Q92888	912 aa	Known RBP	13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	INSR	P06213	1382 aa		13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	PKD1L3	Q7Z443	1732 aa		13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	BRCA1	P38398	1863 aa	Known RBP	13.02	□□□□□ -0.33
TOM1L1-223	ENST00000576932	HTRA3	P83110	453 aa		13.01	□□□□□ -0.33
TOM1L1-223	ENST00000576932	USHBP1	Q8N6Y0	703 aa		13.01	□□□□□ -0.33
TOM1L1-223	ENST00000576932	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.01	□□□□□ -0.33
TOM1L1-223	ENST00000576932	ARFGEF1	Q9Y6D6	1849 aa		13.01	□□□□□ -0.33
TOM1L1-223	ENST00000576932	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13	□□□□□ -0.33
TOM1L1-223	ENST00000576932		A0A0G2JLW4	131 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	GNPAT	O15228	680 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	FCHSD2	O94868	740 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	C9orf131	Q5VYM1	1079 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	MAMSTR	Q6ZN01	415 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	CARD11	Q9BXL7	1154 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	CCDC87	Q9NVE4	849 aa		13	□□□□□ -0.33
TOM1L1-223	ENST00000576932	FBLN1	P23142	703 aa		12.99	□□□□□ -0.33
TOM1L1-223	ENST00000576932	TMF1	P82094	1093 aa		12.99	□□□□□ -0.33
TOM1L1-223	ENST00000576932	SMIM5	Q71RC9	77 aa		12.99	□□□□□ -0.33
TOM1L1-223	ENST00000576932	SMC1B	Q8NDV3	1235 aa		12.99	□□□□□ -0.33
TOM1L1-223	ENST00000576932	NCAPD2	Q15021	1401 aa		12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	FLT4	P35916	1363 aa		12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	DPEP1	P16444	411 aa		12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	FOXK1	P85037	733 aa		12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	RRS1	Q15050	365 aa	Known RBP	12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	KCP	Q6ZWJ8	1503 aa		12.98	□□□□□ -0.33
TOM1L1-223	ENST00000576932	C4A	P0C0L4	1744 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	ZNF831	Q5JPB2	1677 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	KCNA3	P22001	575 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	ATP6V1A	P38606	617 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	ITPK1	Q13572	414 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	TRAPPC3L	Q5T215	181 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	DCAF5	Q96JK2	942 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	TMOD3	Q9NYL9	352 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	SPG7	Q9UQ90	795 aa		12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	RTCB	Q9Y3I0	505 aa	Known RBP	12.97	□□□□□ -0.33
TOM1L1-223	ENST00000576932	POTEF	A5A3E0	1075 aa		12.96	□□□□□ -0.33
TOM1L1-223	ENST00000576932	HSPA1A	P0DMV8	641 aa	Known RBP	12.96	□□□□□ -0.33
TOM1L1-223	ENST00000576932	HSPA1B	P0DMV9	641 aa	Known RBP	12.96	□□□□□ -0.33
TOM1L1-223	ENST00000576932	HSP90AB2P	Q58FF8	381 aa		12.96	□□□□□ -0.33
TOM1L1-223	ENST00000576932	KCNV2	Q8TDN2	545 aa		12.96	□□□□□ -0.33
TOM1L1-223	ENST00000576932	PIM2	Q9P1W9	311 aa		12.96	□□□□□ -0.33
TOM1L1-223	ENST00000576932	C2orf72	A6NCS6	295 aa		12.95	□□□□□ -0.34
TOM1L1-223	ENST00000576932	FYB1	O15117	783 aa		12.95	□□□□□ -0.34
TOM1L1-223	ENST00000576932	RC3H1	Q5TC82	1133 aa	Known RBP	12.95	□□□□□ -0.34
TOM1L1-223	ENST00000576932	RRAGC	Q9HB90	399 aa		12.95	□□□□□ -0.34
TOM1L1-223	ENST00000576932	SCUBE2	Q9NQ36	999 aa		12.95	□□□□□ -0.34
TOM1L1-223	ENST00000576932	PARP3	Q9Y6F1	533 aa		12.95	□□□□□ -0.34
TOM1L1-223	ENST00000576932	KDR	P35968	1356 aa		12.94	□□□□□ -0.34
TOM1L1-223	ENST00000576932	SLC34A2	O95436	690 aa		12.94	□□□□□ -0.34
TOM1L1-223	ENST00000576932	GYS1	P13807	737 aa		12.94	□□□□□ -0.34
TOM1L1-223	ENST00000576932	DALRD3	Q5D0E6	543 aa	Known RBP	12.94	□□□□□ -0.34
TOM1L1-223	ENST00000576932	SIN3A	Q96ST3	1273 aa		12.94	□□□□□ -0.34

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