RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 GAS2L2Q8NHY3 880 aa10.39□□□□□ -0.75
NUP88-213ENST00000576862 CUEDC1Q9NWM3 386 aaPredicted RBP10.39□□□□□ -0.75
NUP88-213ENST00000576862 ATAD2Q6PL18 1390 aa10.39□□□□□ -0.75
NUP88-213ENST00000576862 A0A1B0GTH6 734 aa10.38□□□□□ -0.75
NUP88-213ENST00000576862 ITGA6P23229 1130 aa10.38□□□□□ -0.75
NUP88-213ENST00000576862 WEE1P30291 646 aa10.38□□□□□ -0.75
NUP88-213ENST00000576862 NFX1Q12986 1120 aaKnown RBP10.38□□□□□ -0.75
NUP88-213ENST00000576862 SWI5Q1ZZU3 235 aa10.38□□□□□ -0.75
NUP88-213ENST00000576862 SCG3Q8WXD2 468 aaKnown RBP10.38□□□□□ -0.75
NUP88-213ENST00000576862 SLAIN2Q9P270 581 aa10.38□□□□□ -0.75
NUP88-213ENST00000576862 TMEM88BA6NKF7 163 aa10.37□□□□□ -0.75
NUP88-213ENST00000576862 NOS2P35228 1153 aa10.37□□□□□ -0.75
NUP88-213ENST00000576862 PSMA6P60900 246 aaKnown RBP10.37□□□□□ -0.75
NUP88-213ENST00000576862 LCE2CQ5TA81 110 aa10.37□□□□□ -0.75
NUP88-213ENST00000576862 L3MBTL2Q969R5 705 aa10.37□□□□□ -0.75
NUP88-213ENST00000576862 EML1O00423 815 aa10.36□□□□□ -0.75
NUP88-213ENST00000576862 F11P03951 625 aa10.36□□□□□ -0.75
NUP88-213ENST00000576862 ATP4AP20648 1035 aa10.36□□□□□ -0.75
NUP88-213ENST00000576862 MSX1P28360 303 aa10.36□□□□□ -0.75
NUP88-213ENST00000576862 GAS2L1Q99501 681 aaPredicted RBP10.36□□□□□ -0.75
NUP88-213ENST00000576862 SERTM1A2A2V5 107 aa10.35□□□□□ -0.75
NUP88-213ENST00000576862 PPP1R12BO60237 982 aaPredicted RBP10.35□□□□□ -0.75
NUP88-213ENST00000576862 THBS1P07996 1170 aa10.35□□□□□ -0.75
NUP88-213ENST00000576862 IGFBP4P22692 258 aa10.35□□□□□ -0.75
NUP88-213ENST00000576862 TXLNAP40222 546 aa10.35□□□□□ -0.75
NUP88-213ENST00000576862 OCLNQ16625 522 aa10.35□□□□□ -0.75
NUP88-213ENST00000576862 STAG2Q8N3U4 1231 aa10.35□□□□□ -0.75
NUP88-213ENST00000576862 C2orf49Q9BVC5 232 aaPredicted RBP10.35□□□□□ -0.75
NUP88-213ENST00000576862 CARNS1A5YM72 827 aa10.34□□□□□ -0.75
NUP88-213ENST00000576862 HIRAP54198 1017 aaPredicted RBP10.34□□□□□ -0.75
NUP88-213ENST00000576862 LCE2AQ5TA79 106 aaPredicted RBP10.34□□□□□ -0.75
NUP88-213ENST00000576862 CLP1Q92989 425 aaKnown RBP10.34□□□□□ -0.75
NUP88-213ENST00000576862 AIDAQ96BJ3 306 aa10.34□□□□□ -0.75
NUP88-213ENST00000576862 PRIMPOLQ96LW4 560 aa10.34□□□□□ -0.75
NUP88-213ENST00000576862 GPAMQ9HCL2 828 aa10.34□□□□□ -0.75
NUP88-213ENST00000576862 ERBB4Q15303 1308 aa10.33□□□□□ -0.76
NUP88-213ENST00000576862 PRMT3O60678 531 aa10.33□□□□□ -0.76
NUP88-213ENST00000576862 DBN1Q16643 649 aa10.33□□□□□ -0.76
NUP88-213ENST00000576862 RIPOR1Q6ZS17 1223 aa10.33□□□□□ -0.76
NUP88-213ENST00000576862 CHMP7Q8WUX9 453 aaPredicted RBP10.33□□□□□ -0.76
NUP88-213ENST00000576862 NANOS1Q8WY41 292 aaKnown RBP10.33□□□□□ -0.76
NUP88-213ENST00000576862 ZDHHC3Q9NYG2 299 aa10.33□□□□□ -0.76
NUP88-213ENST00000576862 ZNF232Q9UNY5 417 aa10.33□□□□□ -0.76
NUP88-213ENST00000576862 TRIM22Q8IYM9 498 aa10.32□□□□□ -0.76
NUP88-213ENST00000576862 C7orf43Q8WVR3 580 aa10.32□□□□□ -0.76
NUP88-213ENST00000576862 RUBCNLQ9H714 662 aa10.32□□□□□ -0.76
NUP88-213ENST00000576862 CSB-PGBD3P0DP91 1061 aa10.31□□□□□ -0.76
NUP88-213ENST00000576862 VSIG8P0DPA2 414 aa10.31□□□□□ -0.76
NUP88-213ENST00000576862 NBPF1Q3BBV0 1214 aa10.31□□□□□ -0.76
NUP88-213ENST00000576862 C1orf216Q8TAB5 229 aa10.31□□□□□ -0.76
NUP88-213ENST00000576862 HCN4Q9Y3Q4 1203 aa10.31□□□□□ -0.76
NUP88-213ENST00000576862 WFS1O76024 890 aa10.3□□□□□ -0.76
NUP88-213ENST00000576862 FKBP5Q13451 457 aaPredicted RBP10.3□□□□□ -0.76
NUP88-213ENST00000576862 TREML4Q6UXN2 200 aa10.3□□□□□ -0.76
NUP88-213ENST00000576862 VWA5B2Q8N398 1253 aa10.3□□□□□ -0.76
NUP88-213ENST00000576862 GPR161Q8N6U8 529 aaKnown RBP10.3□□□□□ -0.76
NUP88-213ENST00000576862 SLC16A10Q8TF71 515 aa10.3□□□□□ -0.76
NUP88-213ENST00000576862 KLRG1Q96E93 195 aa10.3□□□□□ -0.76
NUP88-213ENST00000576862 ZNF837Q96EG3 531 aaPredicted RBP10.3□□□□□ -0.76
NUP88-213ENST00000576862 CRISPLD1Q9H336 500 aa10.3□□□□□ -0.76
NUP88-213ENST00000576862 FOXO3O43524 673 aa10.29□□□□□ -0.76
NUP88-213ENST00000576862 UBAP2LQ14157 1087 aaKnown RBP10.29□□□□□ -0.76
NUP88-213ENST00000576862 RETREG2Q8NC44 543 aa10.29□□□□□ -0.76
NUP88-213ENST00000576862 CXXC1Q9P0U4 656 aaPredicted RBP10.29□□□□□ -0.76
NUP88-213ENST00000576862 CHMP3Q9Y3E7 222 aa10.29□□□□□ -0.76
NUP88-213ENST00000576862 CDC14CA4D256 554 aa10.28□□□□□ -0.76
NUP88-213ENST00000576862 TATP17735 454 aaPredicted RBP10.28□□□□□ -0.76
NUP88-213ENST00000576862 GMCL1Q96IK5 515 aa10.28□□□□□ -0.76
NUP88-213ENST00000576862 ZIC5Q96T25 663 aa10.28□□□□□ -0.76
NUP88-213ENST00000576862 PHACTR1Q9C0D0 580 aa10.28□□□□□ -0.76
NUP88-213ENST00000576862 NUCKS1Q9H1E3 243 aaKnown RBP10.28□□□□□ -0.76
NUP88-213ENST00000576862 H7C1W4 665 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 C1orf53Q5VUE5 145 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 SV2AQ7L0J3 742 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 ALDH16A1Q8IZ83 802 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 PGBD3Q8N328 593 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 IRF7Q92985 503 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 USTQ9Y2C2 406 aa10.27□□□□□ -0.77
NUP88-213ENST00000576862 A0A1W2PNR3 127 aa10.26□□□□□ -0.77
NUP88-213ENST00000576862 ATP2B4P23634 1241 aa10.26□□□□□ -0.77
NUP88-213ENST00000576862 LBRQ14739 615 aaKnown RBP10.25□□□□□ -0.77
NUP88-213ENST00000576862 ARSJQ5FYB0 599 aaPredicted RBP10.25□□□□□ -0.77
NUP88-213ENST00000576862 CAPN12Q6ZSI9 719 aa10.25□□□□□ -0.77
NUP88-213ENST00000576862 GTPBP3Q969Y2 492 aaKnown RBP10.25□□□□□ -0.77
NUP88-213ENST00000576862 NGLY1Q96IV0 654 aa10.25□□□□□ -0.77
NUP88-213ENST00000576862 QTRT2Q9H974 415 aaKnown RBP10.24□□□□□ -0.77
NUP88-213ENST00000576862 GPR25O00155 361 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 SSFA2P28290 1259 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 GMPRP36959 345 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 EFHC2Q5JST6 749 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 PHLDB3Q6NSJ2 640 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 BICDL1Q6ZP65 573 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 NLRP8Q86W28 1048 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 RHPN1Q8TCX5 695 aa10.23□□□□□ -0.77
NUP88-213ENST00000576862 GPC6Q9Y625 555 aaPredicted RBP10.23□□□□□ -0.77
NUP88-213ENST00000576862 SCNN1AP37088 669 aa10.22□□□□□ -0.77
NUP88-213ENST00000576862 MKNK1Q9BUB5 465 aa10.22□□□□□ -0.77
NUP88-213ENST00000576862 ZCCHC2Q9C0B9 1178 aaKnown RBP10.22□□□□□ -0.77
NUP88-213ENST00000576862 NDFIP2Q9NV92 336 aa10.22□□□□□ -0.77
NUP88-213ENST00000576862 KRT76Q01546 638 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms