RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 RPAP2Q8IXW5 612 aaPredicted RBP8.84□□□□□ -0.99
SMG1-215ENST00000568239 SYTL4Q96C24 671 aaPredicted RBP8.84□□□□□ -0.99
SMG1-215ENST00000568239 EXOC5O00471 708 aa8.83□□□□□ -1
SMG1-215ENST00000568239 GNAI3P08754 354 aa8.83□□□□□ -1
SMG1-215ENST00000568239 CHD1LQ86WJ1 897 aa8.83□□□□□ -1
SMG1-215ENST00000568239 DDX21Q9NR30 783 aaKnown RBP eCLIP8.83□□□□□ -1
SMG1-215ENST00000568239 HYPKQ9NX55 129 aa8.83□□□□□ -1
SMG1-215ENST00000568239 MAP3K2Q9Y2U5 619 aa8.83□□□□□ -1
SMG1-215ENST00000568239 PLEKHG2Q9H7P9 1386 aa8.83□□□□□ -1
SMG1-215ENST00000568239 HEG1Q9ULI3 1381 aa8.83□□□□□ -1
SMG1-215ENST00000568239 COL14A1Q05707 1796 aaKnown RBP8.83□□□□□ -1
SMG1-215ENST00000568239 ERVV-2B6SEH9 535 aa8.83□□□□□ -1
SMG1-215ENST00000568239 UBTFL1P0CB47 393 aaPredicted RBP8.83□□□□□ -1
SMG1-215ENST00000568239 NUCB1Q02818 461 aa8.83□□□□□ -1
SMG1-215ENST00000568239 C8orf34Q49A92 452 aa8.83□□□□□ -1
SMG1-215ENST00000568239 ANKRD44Q8N8A2 993 aa8.83□□□□□ -1
SMG1-215ENST00000568239 TMOD3Q9NYL9 352 aa8.83□□□□□ -1
SMG1-215ENST00000568239 ADAMTS7Q9UKP4 1686 aa8.83□□□□□ -1
SMG1-215ENST00000568239 LRRFIP2Q9Y608 721 aaKnown RBP8.82□□□□□ -1
SMG1-215ENST00000568239 COL16A1Q07092 1604 aaPredicted RBP8.82□□□□□ -1
SMG1-215ENST00000568239 HMMRO75330 724 aa8.82□□□□□ -1
SMG1-215ENST00000568239 DDX58O95786 925 aaKnown RBP8.82□□□□□ -1
SMG1-215ENST00000568239 RIC3Q7Z5B4 369 aa8.82□□□□□ -1
SMG1-215ENST00000568239 USP44Q9H0E7 712 aa8.82□□□□□ -1
SMG1-215ENST00000568239 NKX1-1Q15270 411 aaPredicted RBP8.82□□□□□ -1
SMG1-215ENST00000568239 KSR2Q6VAB6 950 aa8.82□□□□□ -1
SMG1-215ENST00000568239 C8orf37Q96NL8 207 aa8.82□□□□□ -1
SMG1-215ENST00000568239 ATP10DQ9P241 1426 aa8.81□□□□□ -1
SMG1-215ENST00000568239 PDIA6Q15084 440 aa8.81□□□□□ -1
SMG1-215ENST00000568239 BEND3Q5T5X7 828 aa8.81□□□□□ -1
SMG1-215ENST00000568239 COPS6Q7L5N1 327 aa8.81□□□□□ -1
SMG1-215ENST00000568239 XAGE3Q8WTP9 111 aa8.81□□□□□ -1
SMG1-215ENST00000568239 NGLY1Q96IV0 654 aa8.81□□□□□ -1
SMG1-215ENST00000568239 C9orf78Q9NZ63 289 aaPredicted RBP8.81□□□□□ -1
SMG1-215ENST00000568239 COL22A1Q8NFW1 1626 aaPredicted RBP8.81□□□□□ -1
SMG1-215ENST00000568239 NBPF7P0C2Y1 421 aaPredicted RBP8.81□□□□□ -1
SMG1-215ENST00000568239 CWF19L2Q2TBE0 894 aaKnown RBP8.81□□□□□ -1
SMG1-215ENST00000568239 DCTPP1Q9H773 170 aa8.81□□□□□ -1
SMG1-215ENST00000568239 ZNF330Q9Y3S2 320 aaPredicted RBP8.81□□□□□ -1
SMG1-215ENST00000568239 ADCY9O60503 1353 aa8.81□□□□□ -1
SMG1-215ENST00000568239 MRC1P22897 1456 aa8.8□□□□□ -1
SMG1-215ENST00000568239 PNMA6EA0A0J9YXQ4 647 aa8.8□□□□□ -1
SMG1-215ENST00000568239 SMARCA5O60264 1052 aaPredicted RBP8.8□□□□□ -1
SMG1-215ENST00000568239 DDB1Q16531 1140 aa8.8□□□□□ -1
SMG1-215ENST00000568239 RBM42Q9BTD8 480 aaKnown RBP8.8□□□□□ -1
SMG1-215ENST00000568239 EXOC6BQ9Y2D4 811 aa8.8□□□□□ -1
SMG1-215ENST00000568239 C5P01031 1676 aa8.8□□□□□ -1
SMG1-215ENST00000568239 NEXNQ0ZGT2 675 aa8.79□□□□□ -1
SMG1-215ENST00000568239 PIGBQ92521 554 aa8.79□□□□□ -1
SMG1-215ENST00000568239 ARXQ96QS3 562 aa8.79□□□□□ -1
SMG1-215ENST00000568239 ASAP1Q9ULH1 1129 aa8.79□□□□□ -1
SMG1-215ENST00000568239 A1BGP04217 495 aa8.79□□□□□ -1
SMG1-215ENST00000568239 ANKRD13DQ6ZTN6 518 aa8.79□□□□□ -1
SMG1-215ENST00000568239 SPATA31A1Q5TZJ5 1347 aa8.79□□□□□ -1
SMG1-215ENST00000568239 PXDNLA1KZ92 1463 aa8.79□□□□□ -1
SMG1-215ENST00000568239 C16orf71Q8IYS4 520 aaPredicted RBP8.79□□□□□ -1
SMG1-215ENST00000568239 MYD88Q99836 296 aa8.79□□□□□ -1
SMG1-215ENST00000568239 SHANK3Q9BYB0 1731 aa8.78□□□□□ -1
SMG1-215ENST00000568239 PLCH1Q4KWH8 1693 aa8.78□□□□□ -1
SMG1-215ENST00000568239 ATP8B2P98198 1209 aa8.78□□□□□ -1
SMG1-215ENST00000568239 SRGAP3O43295 1099 aa8.78□□□□□ -1
SMG1-215ENST00000568239 SEC24BO95487 1268 aa8.78□□□□□ -1
SMG1-215ENST00000568239 PRIM1P49642 420 aaKnown RBP8.78□□□□□ -1
SMG1-215ENST00000568239 PPP1R42Q7Z4L9 355 aa8.78□□□□□ -1
SMG1-215ENST00000568239 LINS1Q8NG48 757 aa8.78□□□□□ -1
SMG1-215ENST00000568239 CERKQ8TCT0 537 aa8.78□□□□□ -1
SMG1-215ENST00000568239 ACSBG1Q96GR2 724 aa8.78□□□□□ -1
SMG1-215ENST00000568239 FAM98CQ17RN3 349 aaKnown RBP8.77□□□□□ -1.01
SMG1-215ENST00000568239 JCADQ9P266 1359 aa8.77□□□□□ -1.01
SMG1-215ENST00000568239 DISP2A7MBM2 1401 aa8.77□□□□□ -1.01
SMG1-215ENST00000568239 ATP5J2-PTCD1G3V325 749 aa8.77□□□□□ -1.01
SMG1-215ENST00000568239 ALDH1L1O75891 902 aa8.77□□□□□ -1.01
SMG1-215ENST00000568239 CDCA7Q9BWT1 371 aaPredicted RBP8.77□□□□□ -1.01
SMG1-215ENST00000568239 THRAP3Q9Y2W1 955 aaKnown RBP8.77□□□□□ -1.01
SMG1-215ENST00000568239 NBPF26B4DH59 902 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 SURF6O75683 361 aaKnown RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 NBPF14Q5TI25 921 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 MEX3CQ5U5Q3 659 aaKnown RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 NBPF10Q6P3W6 841 aaKnown RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 UNC5CLQ8IV45 518 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 NBPF15Q8N660 670 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 JARID2Q92833 1246 aaPredicted RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 UPF2Q9HAU5 1272 aaKnown RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 ATG3Q9NT62 314 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 SPATA31A5Q5VU36 1347 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 SPATA31A7Q8IWB4 1347 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 GRM8O00222 908 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 DNAJC10Q8IXB1 793 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 OTUD7AQ8TE49 926 aaPredicted RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 IGKV5-2P06315 115 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 IPO9Q96P70 1041 aaKnown RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 METTL22Q9BUU2 404 aaPredicted RBP8.76□□□□□ -1.01
SMG1-215ENST00000568239 LRRCC1Q9C099 1032 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 ZBTB3Q9H5J0 574 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 TOGARAM1Q9Y4F4 1720 aa8.76□□□□□ -1.01
SMG1-215ENST00000568239 MSH5O43196 834 aa8.75□□□□□ -1.01
SMG1-215ENST00000568239 OS9Q13438 667 aaPredicted RBP8.75□□□□□ -1.01
SMG1-215ENST00000568239 TTLL7Q6ZT98 887 aa8.75□□□□□ -1.01
SMG1-215ENST00000568239 LRP10Q7Z4F1 713 aa8.75□□□□□ -1.01
SMG1-215ENST00000568239 PLEKHM2Q8IWE5 1019 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms