RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 NARFQ9UHQ1 456 aa23.93■■□□□ 1.42
CLK3-221ENST00000568139 KCPQ6ZWJ8 1503 aa23.93■■□□□ 1.42
CLK3-221ENST00000568139 NRXN2Q9P2S2 1712 aa23.93■■□□□ 1.42
CLK3-221ENST00000568139 KDM2BQ8NHM5 1336 aa23.92■■□□□ 1.42
CLK3-221ENST00000568139 HMOX1P09601 288 aa23.92■■□□□ 1.42
CLK3-221ENST00000568139 WDR90Q96KV7 1748 aa23.91■■□□□ 1.42
CLK3-221ENST00000568139 NFIXQ14938 502 aa23.91■■□□□ 1.42
CLK3-221ENST00000568139 C16orf71Q8IYS4 520 aaPredicted RBP23.91■■□□□ 1.42
CLK3-221ENST00000568139 COL15A1P39059 1388 aa23.91■■□□□ 1.42
CLK3-221ENST00000568139 MTHFSDQ2M296 383 aaKnown RBP23.9■■□□□ 1.42
CLK3-221ENST00000568139 VSIG10Q8N0Z9 540 aa23.9■■□□□ 1.42
CLK3-221ENST00000568139 ZBTB1Q9Y2K1 713 aa23.9■■□□□ 1.42
CLK3-221ENST00000568139 FSTL1Q12841 308 aa23.89■■□□□ 1.41
CLK3-221ENST00000568139 BCL2L12Q9HB09 334 aa23.89■■□□□ 1.41
CLK3-221ENST00000568139 UBR2Q8IWV8 1755 aa23.88■■□□□ 1.41
CLK3-221ENST00000568139 TNRC6CQ9HCJ0 1690 aaKnown RBP23.88■■□□□ 1.41
CLK3-221ENST00000568139 DLEC1Q9Y238 1755 aa23.88■■□□□ 1.41
CLK3-221ENST00000568139 KIF7Q2M1P5 1343 aa23.87■■□□□ 1.41
CLK3-221ENST00000568139 PER1O15534 1290 aaPredicted RBP23.87■■□□□ 1.41
CLK3-221ENST00000568139 RRAGCQ9HB90 399 aa23.87■■□□□ 1.41
CLK3-221ENST00000568139 DIAPH1O60610 1272 aaKnown RBP23.86■■□□□ 1.41
CLK3-221ENST00000568139 SERPINB2P05120 415 aa23.86■■□□□ 1.41
CLK3-221ENST00000568139 ZC3H4Q9UPT8 1303 aaKnown RBP23.84■■□□□ 1.41
CLK3-221ENST00000568139 RASSF7Q02833 373 aa23.84■■□□□ 1.41
CLK3-221ENST00000568139 CCER1Q8TC90 406 aaPredicted RBP23.83■■□□□ 1.41
CLK3-221ENST00000568139 CCDC88AQ3V6T2 1871 aa23.83■■□□□ 1.4
CLK3-221ENST00000568139 CANXP27824 592 aaKnown RBP23.82■■□□□ 1.4
CLK3-221ENST00000568139 EIF5P55010 431 aaKnown RBP23.82■■□□□ 1.4
CLK3-221ENST00000568139 TTLL6Q8N841 843 aa23.82■■□□□ 1.4
CLK3-221ENST00000568139 KLRG1Q96E93 195 aa23.82■■□□□ 1.4
CLK3-221ENST00000568139 STARD3NLO95772 234 aa23.81■■□□□ 1.4
CLK3-221ENST00000568139 LMNB1P20700 586 aa23.81■■□□□ 1.4
CLK3-221ENST00000568139 PRELPP51888 382 aa23.81■■□□□ 1.4
CLK3-221ENST00000568139 HTRA3P83110 453 aa23.81■■□□□ 1.4
CLK3-221ENST00000568139 CC2D1BQ5T0F9 858 aaKnown RBP23.8■■□□□ 1.4
CLK3-221ENST00000568139 C2CD5Q86YS7 1000 aa23.8■■□□□ 1.4
CLK3-221ENST00000568139 TTC5Q8N0Z6 440 aa23.8■■□□□ 1.4
CLK3-221ENST00000568139 JMYQ8N9B5 988 aa23.8■■□□□ 1.4
CLK3-221ENST00000568139 A0A087WZG4 1122 aa23.79■■□□□ 1.4
CLK3-221ENST00000568139 SMC1BQ8NDV3 1235 aa23.79■■□□□ 1.4
CLK3-221ENST00000568139 CARMIL3Q8ND23 1372 aa23.78■■□□□ 1.4
CLK3-221ENST00000568139 GLTPD2A6NH11 291 aa23.78■■□□□ 1.4
CLK3-221ENST00000568139 H0YIN7 160 aa23.78■■□□□ 1.4
CLK3-221ENST00000568139 COL3A1P02461 1466 aaPredicted RBP23.78■■□□□ 1.4
CLK3-221ENST00000568139 SIPA1L3O60292 1781 aaPredicted RBP23.78■■□□□ 1.4
CLK3-221ENST00000568139 ANKRD31Q8N7Z5 1873 aa23.77■■□□□ 1.4
CLK3-221ENST00000568139 IL17REQ8NFR9 667 aa23.77■■□□□ 1.4
CLK3-221ENST00000568139 ZNF496Q96IT1 587 aaPredicted RBP23.77■■□□□ 1.4
CLK3-221ENST00000568139 HEG1Q9ULI3 1381 aa23.77■■□□□ 1.4
CLK3-221ENST00000568139 ZNF790Q6PG37 636 aa23.76■■□□□ 1.39
CLK3-221ENST00000568139 BICDL1Q6ZP65 573 aa23.76■■□□□ 1.39
CLK3-221ENST00000568139 TEX13AQ9BXU3 409 aaPredicted RBP23.76■■□□□ 1.39
CLK3-221ENST00000568139 NPC1L1Q9UHC9 1359 aa23.76■■□□□ 1.39
CLK3-221ENST00000568139 GNAT3A8MTJ3 354 aa23.75■■□□□ 1.39
CLK3-221ENST00000568139 NFKBIEO00221 500 aa23.75■■□□□ 1.39
CLK3-221ENST00000568139 VEGFAP15692 232 aaPredicted RBP23.75■■□□□ 1.39
CLK3-221ENST00000568139 TEFQ10587 303 aa23.75■■□□□ 1.39
CLK3-221ENST00000568139 TBC1D9BQ66K14 1250 aa23.75■■□□□ 1.39
CLK3-221ENST00000568139 GAS2L2Q8NHY3 880 aa23.75■■□□□ 1.39
CLK3-221ENST00000568139 TIAM2Q8IVF5 1701 aa23.75■■□□□ 1.39
CLK3-221ENST00000568139 SCN7AQ01118 1682 aa23.74■■□□□ 1.39
CLK3-221ENST00000568139 PDZRN3Q9UPQ7 1066 aa23.74■■□□□ 1.39
CLK3-221ENST00000568139 BRIP1Q9BX63 1249 aa23.73■■□□□ 1.39
CLK3-221ENST00000568139 U2SURPO15042 1029 aaKnown RBP23.72■■□□□ 1.39
CLK3-221ENST00000568139 IL6STP40189 918 aaPredicted RBP23.72■■□□□ 1.39
CLK3-221ENST00000568139 TBC1D2BQ9UPU7 963 aa23.72■■□□□ 1.39
CLK3-221ENST00000568139 DICER1Q9UPY3 1922 aaKnown RBP23.72■■□□□ 1.39
CLK3-221ENST00000568139 FER1L6Q2WGJ9 1857 aa23.71■■□□□ 1.39
CLK3-221ENST00000568139 PDE6BP35913 854 aa23.71■■□□□ 1.39
CLK3-221ENST00000568139 CEMIPQ8WUJ3 1361 aa23.7■■□□□ 1.38
CLK3-221ENST00000568139 PRR5LQ6MZQ0 368 aa23.7■■□□□ 1.38
CLK3-221ENST00000568139 ZNF622Q969S3 477 aaKnown RBP eCLIP23.7■■□□□ 1.383e-6■□□□□ 10
CLK3-221ENST00000568139 FMNL2Q96PY5 1086 aa23.7■■□□□ 1.38
CLK3-221ENST00000568139 POTECB2RU33 542 aa23.69■■□□□ 1.38
CLK3-221ENST00000568139 COL11A2P13942 1736 aaPredicted RBP23.69■■□□□ 1.38
CLK3-221ENST00000568139 A1BGP04217 495 aa23.68■■□□□ 1.38
CLK3-221ENST00000568139 ZNF330Q9Y3S2 320 aaPredicted RBP23.68■■□□□ 1.38
CLK3-221ENST00000568139 C21orf2O43822 256 aa23.67■■□□□ 1.38
CLK3-221ENST00000568139 CAMTA2O94983 1202 aa23.67■■□□□ 1.38
CLK3-221ENST00000568139 DPY19L2Q6NUT2 758 aa23.67■■□□□ 1.38
CLK3-221ENST00000568139 CCDC24Q8N4L8 307 aa23.67■■□□□ 1.38
CLK3-221ENST00000568139 COL13A1Q5TAT6 717 aaPredicted RBP23.66■■□□□ 1.38
CLK3-221ENST00000568139 SETDB2Q96T68 719 aa23.66■■□□□ 1.38
CLK3-221ENST00000568139 KCNQ3O43525 872 aa23.65■■□□□ 1.38
CLK3-221ENST00000568139 PHACTR3Q96KR7 559 aa23.65■■□□□ 1.38
CLK3-221ENST00000568139 SLX4Q8IY92 1834 aa23.65■■□□□ 1.38
CLK3-221ENST00000568139 BCORQ6W2J9 1755 aa23.65■■□□□ 1.38
CLK3-221ENST00000568139 LTBP3Q9NS15 1303 aa23.64■■□□□ 1.38
CLK3-221ENST00000568139 BTBD11A6QL63 1104 aa23.64■■□□□ 1.37
CLK3-221ENST00000568139 CNGB1Q14028 1251 aaPredicted RBP23.64■■□□□ 1.37
CLK3-221ENST00000568139 ERFEQ4G0M1 354 aa23.64■■□□□ 1.37
CLK3-221ENST00000568139 NPM2Q86SE8 214 aaKnown RBP23.64■■□□□ 1.37
CLK3-221ENST00000568139 ZNF219Q9P2Y4 722 aaPredicted RBP23.64■■□□□ 1.37
CLK3-221ENST00000568139 STYK1Q6J9G0 422 aa23.63■■□□□ 1.37
CLK3-221ENST00000568139 CNBD1Q8NA66 436 aa23.63■■□□□ 1.37
CLK3-221ENST00000568139 CNKSR1Q969H4 720 aa23.63■■□□□ 1.37
CLK3-221ENST00000568139 RSPH6AQ9H0K4 717 aa23.63■■□□□ 1.37
CLK3-221ENST00000568139 ARFGEF2Q9Y6D5 1785 aa23.63■■□□□ 1.37
CLK3-221ENST00000568139 CACNA1SQ13698 1873 aa23.62■■□□□ 1.37
CLK3-221ENST00000568139 SRGNP10124 158 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms