RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 G2E3Q7L622 706 aa38.96■■■■□ 3.83
CTCF-203ENST00000566078 API5Q9BZZ5 524 aaKnown RBP38.96■■■■□ 3.83
CTCF-203ENST00000566078 N4BP2Q86UW6 1770 aaPredicted RBP38.96■■■■□ 3.83
CTCF-203ENST00000566078 RGS12O14924 1447 aa38.96■■■■□ 3.83
CTCF-203ENST00000566078 RBM6P78332 1123 aaKnown RBP38.95■■■■□ 3.83
CTCF-203ENST00000566078 TJP1Q07157 1748 aa38.95■■■■□ 3.83
CTCF-203ENST00000566078 PPP4R2Q9NY27 417 aa38.94■■■■□ 3.82
CTCF-203ENST00000566078 DBF4Q9UBU7 674 aaPredicted RBP38.92■■■■□ 3.82
CTCF-203ENST00000566078 FLIIQ13045 1269 aa38.92■■■■□ 3.82
CTCF-203ENST00000566078 USP16Q9Y5T5 823 aa38.92■■■■□ 3.82
CTCF-203ENST00000566078 ABCC4O15439 1325 aa38.91■■■■□ 3.82
CTCF-203ENST00000566078 FAM182BQ5T319 152 aa38.91■■■■□ 3.82
CTCF-203ENST00000566078 KCNQ2O43526 872 aa38.89■■■■□ 3.82
CTCF-203ENST00000566078 MVPQ14764 893 aaKnown RBP38.89■■■■□ 3.82
CTCF-203ENST00000566078 TMEM57Q8N5G2 664 aa38.89■■■■□ 3.82
CTCF-203ENST00000566078 ANXA1P04083 346 aa38.89■■■■□ 3.82
CTCF-203ENST00000566078 RBM42Q9BTD8 480 aaKnown RBP38.89■■■■□ 3.82
CTCF-203ENST00000566078 PHAXQ9H814 394 aaKnown RBP38.88■■■■□ 3.81
CTCF-203ENST00000566078 CICQ96RK0 1608 aaPredicted RBP38.87■■■■□ 3.81
CTCF-203ENST00000566078 PROSER3Q2NL68 480 aa38.86■■■■□ 3.81
CTCF-203ENST00000566078 ITPRIPQ8IWB1 547 aa38.86■■■■□ 3.81
CTCF-203ENST00000566078 VSIG10Q8N0Z9 540 aa38.86■■■■□ 3.81
CTCF-203ENST00000566078 FKBP5Q13451 457 aaPredicted RBP38.85■■■■□ 3.81
CTCF-203ENST00000566078 DDX21Q9NR30 783 aaKnown RBP eCLIP38.85■■■■□ 3.81
CTCF-203ENST00000566078 PDIA6Q15084 440 aa38.84■■■■□ 3.81
CTCF-203ENST00000566078 HYPKQ9NX55 129 aa38.83■■■■□ 3.81
CTCF-203ENST00000566078 ZNF831Q5JPB2 1677 aa38.83■■■■□ 3.81
CTCF-203ENST00000566078 KRT27Q7Z3Y8 459 aa38.81■■■■□ 3.8
CTCF-203ENST00000566078 RGS17Q9UGC6 210 aaPredicted RBP38.81■■■■□ 3.8
CTCF-203ENST00000566078 PALLDQ8WX93 1383 aa38.81■■■■□ 3.8
CTCF-203ENST00000566078 RXRBP28702 533 aa38.81■■■■□ 3.8
CTCF-203ENST00000566078 ERBB4Q15303 1308 aa38.8■■■■□ 3.8
CTCF-203ENST00000566078 DDX19BQ9UMR2 479 aa38.8■■■■□ 3.8
CTCF-203ENST00000566078 PXDNLA1KZ92 1463 aa38.79■■■■□ 3.8
CTCF-203ENST00000566078 MYL6BP14649 208 aa38.79■■■■□ 3.8
CTCF-203ENST00000566078 DNAJC10Q8IXB1 793 aa38.79■■■■□ 3.8
CTCF-203ENST00000566078 TEX13AQ9BXU3 409 aaPredicted RBP38.79■■■■□ 3.8
CTCF-203ENST00000566078 SMARCC1Q92922 1105 aaPredicted RBP38.78■■■■□ 3.8
CTCF-203ENST00000566078 SLC4A9Q96Q91 983 aa38.78■■■■□ 3.8
CTCF-203ENST00000566078 COL5A3P25940 1745 aaPredicted RBP38.78■■■■□ 3.8
CTCF-203ENST00000566078 F6X3S4 739 aa38.78■■■■□ 3.8
CTCF-203ENST00000566078 LY75O60449 1722 aa38.77■■■■□ 3.8
CTCF-203ENST00000566078 PIP4K2AP48426 406 aaPredicted RBP38.77■■■■□ 3.8
CTCF-203ENST00000566078 B4GALNT3Q6L9W6 998 aa38.77■■■■□ 3.8
CTCF-203ENST00000566078 PTF1AQ7RTS3 328 aa38.76■■■■□ 3.8
CTCF-203ENST00000566078 ARFGEF2Q9Y6D5 1785 aa38.76■■■■□ 3.8
CTCF-203ENST00000566078 CCDC136Q96JN2 1154 aa38.75■■■■□ 3.79
CTCF-203ENST00000566078 INTS3Q68E01 1043 aaKnown RBP38.74■■■■□ 3.79
CTCF-203ENST00000566078 SLC4A10Q6U841 1118 aa38.74■■■■□ 3.79
CTCF-203ENST00000566078 A1BGP04217 495 aa38.72■■■■□ 3.79
CTCF-203ENST00000566078 POTEAQ6S8J7 498 aa38.72■■■■□ 3.79
CTCF-203ENST00000566078 NUP188Q5SRE5 1749 aa38.72■■■■□ 3.79
CTCF-203ENST00000566078 RREB1Q92766 1687 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 ADCY9O60503 1353 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 LOC102724428A0A0B4J2F2 783 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 NBPF26B4DH59 902 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 STARD3NLO95772 234 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 SIK1P57059 783 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 AAMPQ13685 434 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 NBPF14Q5TI25 921 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 NBPF10Q6P3W6 841 aaKnown RBP38.71■■■■□ 3.79
CTCF-203ENST00000566078 LRP10Q7Z4F1 713 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 NBPF15Q8N660 670 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 FAM196AQ6ZSG2 479 aa38.71■■■■□ 3.79
CTCF-203ENST00000566078 AIMP1Q12904 312 aaKnown RBP38.7■■■■□ 3.79
CTCF-203ENST00000566078 CCT4P50991 539 aaKnown RBP38.69■■■■□ 3.78
CTCF-203ENST00000566078 XAGE3Q8WTP9 111 aa38.69■■■■□ 3.78
CTCF-203ENST00000566078 PI4KAP2A4QPH2 592 aa38.68■■■■□ 3.78
CTCF-203ENST00000566078 ATP6V1AP38606 617 aa38.68■■■■□ 3.78
CTCF-203ENST00000566078 PI4KAP1Q8N8J0 262 aa38.68■■■■□ 3.78
CTCF-203ENST00000566078 DDX58O95786 925 aaKnown RBP38.67■■■■□ 3.78
CTCF-203ENST00000566078 AFDNP55196 1824 aaKnown RBP38.67■■■■□ 3.78
CTCF-203ENST00000566078 TAF1LQ8IZX4 1826 aa38.67■■■■□ 3.78
CTCF-203ENST00000566078 CYP19A1P11511 503 aaPredicted RBP38.67■■■■□ 3.78
CTCF-203ENST00000566078 MYH14Q7Z406 1995 aaKnown RBP38.66■■■■□ 3.78
CTCF-203ENST00000566078 COPS6Q7L5N1 327 aa38.66■■■■□ 3.78
CTCF-203ENST00000566078 DNAAF4Q8WXU2 420 aa38.66■■■■□ 3.78
CTCF-203ENST00000566078 EP400Q96L91 3159 aa38.66■■■■□ 3.78
CTCF-203ENST00000566078 KSR2Q6VAB6 950 aa38.65■■■■□ 3.78
CTCF-203ENST00000566078 CHMP4BQ9H444 224 aaKnown RBP38.65■■■■□ 3.78
CTCF-203ENST00000566078 BCL11BQ9C0K0 894 aaPredicted RBP38.64■■■■□ 3.78
CTCF-203ENST00000566078 ZBTB7BO15156 539 aaPredicted RBP38.63■■■■□ 3.78
CTCF-203ENST00000566078 MAP3K2Q9Y2U5 619 aa38.63■■■■□ 3.78
CTCF-203ENST00000566078 ZBTB40Q9NUA8 1239 aa38.63■■■■□ 3.77
CTCF-203ENST00000566078 ITPK1Q13572 414 aa38.62■■■■□ 3.77
CTCF-203ENST00000566078 ATP10DQ9P241 1426 aa38.62■■■■□ 3.77
CTCF-203ENST00000566078 RIC3Q7Z5B4 369 aa38.59■■■■□ 3.77
CTCF-203ENST00000566078 ZBTB1Q9Y2K1 713 aa38.57■■■■□ 3.77
CTCF-203ENST00000566078 SRCIN1Q9C0H9 1055 aa38.56■■■■□ 3.76
CTCF-203ENST00000566078 BEND3Q5T5X7 828 aa38.56■■■■□ 3.76
CTCF-203ENST00000566078 ANKRD13DQ6ZTN6 518 aa38.56■■■■□ 3.76
CTCF-203ENST00000566078 ZNF330Q9Y3S2 320 aaPredicted RBP38.56■■■■□ 3.76
CTCF-203ENST00000566078 PCDHB15Q9Y5E8 787 aa38.56■■■■□ 3.76
CTCF-203ENST00000566078 TRIM37O94972 964 aa38.55■■■■□ 3.76
CTCF-203ENST00000566078 TTLL7Q6ZT98 887 aa38.54■■■■□ 3.76
CTCF-203ENST00000566078 CCDC87Q9NVE4 849 aa38.54■■■■□ 3.76
CTCF-203ENST00000566078 CRKLP46109 303 aaKnown RBP38.53■■■■□ 3.76
CTCF-203ENST00000566078 MEIS3Q99687 375 aa38.53■■■■□ 3.76
CTCF-203ENST00000566078 TNS1Q9HBL0 1735 aaKnown RBP38.53■■■■□ 3.76
CTCF-203ENST00000566078 PLBD2Q8NHP8 589 aa38.52■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms