RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 RABEP1Q15276 862 aa16.95■□□□□ 0.3
GTF3C1-203ENST00000562609 USP25Q9UHP3 1055 aa16.95■□□□□ 0.3
GTF3C1-203ENST00000562609 MBD3O95983 291 aa16.95■□□□□ 0.3
GTF3C1-203ENST00000562609 CHMP4AQ9BY43 222 aa16.94■□□□□ 0.3
GTF3C1-203ENST00000562609 CWC22Q9HCG8 908 aaKnown RBP16.94■□□□□ 0.3
GTF3C1-203ENST00000562609 SLFN14P0C7P3 912 aa16.94■□□□□ 0.3
GTF3C1-203ENST00000562609 PIK3R4Q99570 1358 aa16.94■□□□□ 0.3
GTF3C1-203ENST00000562609 CHL1O00533 1208 aa16.93■□□□□ 0.3
GTF3C1-203ENST00000562609 ANKRD45Q5TZF3 282 aa16.93■□□□□ 0.3
GTF3C1-203ENST00000562609 RTF1Q92541 710 aaKnown RBP16.93■□□□□ 0.3
GTF3C1-203ENST00000562609 ZBTB7BO15156 539 aaPredicted RBP16.93■□□□□ 0.3
GTF3C1-203ENST00000562609 ZNF428Q96B54 188 aa16.93■□□□□ 0.3
GTF3C1-203ENST00000562609 DNAJC2Q99543 621 aaKnown RBP16.93■□□□□ 0.3
GTF3C1-203ENST00000562609 CCDC66A2RUB6 948 aa16.92■□□□□ 0.3
GTF3C1-203ENST00000562609 CHD2O14647 1828 aaKnown RBP16.92■□□□□ 0.3
GTF3C1-203ENST00000562609 ANKARQ7Z5J8 1434 aa16.92■□□□□ 0.3
GTF3C1-203ENST00000562609 CTIFO43310 598 aaKnown RBP16.92■□□□□ 0.3
GTF3C1-203ENST00000562609 FMN2Q9NZ56 1722 aa16.91■□□□□ 0.3
GTF3C1-203ENST00000562609 IGSF1Q8N6C5 1336 aa16.91■□□□□ 0.3
GTF3C1-203ENST00000562609 ADCY5O95622 1261 aa16.91■□□□□ 0.3
GTF3C1-203ENST00000562609 NECTIN2Q92692 538 aa16.91■□□□□ 0.3
GTF3C1-203ENST00000562609 TIGD1Q96MW7 591 aa16.91■□□□□ 0.3
GTF3C1-203ENST00000562609 TSPYL4Q9UJ04 414 aa16.91■□□□□ 0.3
GTF3C1-203ENST00000562609 BRPF1P55201 1214 aaPredicted RBP16.9■□□□□ 0.3
GTF3C1-203ENST00000562609 RGPD1P0DJD0 1748 aa16.9■□□□□ 0.3
GTF3C1-203ENST00000562609 ARHGEF10O15013 1369 aa16.9■□□□□ 0.3
GTF3C1-203ENST00000562609 SLC20A2Q08357 652 aa16.9■□□□□ 0.3
GTF3C1-203ENST00000562609 CTNNA3Q9UI47 895 aa16.9■□□□□ 0.3
GTF3C1-203ENST00000562609 CDC45O75419 566 aa16.89■□□□□ 0.29
GTF3C1-203ENST00000562609 NCBP1Q09161 790 aaKnown RBP16.89■□□□□ 0.29
GTF3C1-203ENST00000562609 ADAMTSL3P82987 1691 aa16.89■□□□□ 0.29
GTF3C1-203ENST00000562609 ARHGAP45Q92619 1136 aa16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 SYAP1Q96A49 352 aaPredicted RBP16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 NPHP4O75161 1426 aaPredicted RBP16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 SLC4A2P04920 1241 aa16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 PROSER2Q86WR7 435 aaPredicted RBP16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 CRB1P82279 1406 aa16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 TERF2Q15554 542 aa16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 LRRC59Q96AG4 307 aaKnown RBP16.88■□□□□ 0.29
GTF3C1-203ENST00000562609 KDRP35968 1356 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 ABCC4O15439 1325 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 UVSSAQ2YD98 709 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 SIRT2Q8IXJ6 389 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 KIAA1524Q8TCG1 905 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 DDX41Q9UJV9 622 aaKnown RBP16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 G2E3Q7L622 706 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 FAM184AQ8NB25 1140 aa16.87■□□□□ 0.29
GTF3C1-203ENST00000562609 IRX3P78415 501 aaPredicted RBP16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 NBPF6Q5VWK0 638 aa16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 CERS3Q8IU89 383 aa16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 NBPF4Q96M43 638 aa16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 PYCARDQ9ULZ3 195 aa16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 DDX17Q92841 729 aaKnown RBP16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 MARF1Q9Y4F3 1742 aaKnown RBP16.86■□□□□ 0.29
GTF3C1-203ENST00000562609 ERICH4A6NGS2 130 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 F6X3S4 739 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 PHF14O94880 888 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 CAPN2P17655 700 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 PLCB2Q00722 1185 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 API5Q9BZZ5 524 aaKnown RBP16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 ADGRL3Q9HAR2 1447 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 ST18O60284 1047 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 IL17REQ8NFR9 667 aa16.85■□□□□ 0.29
GTF3C1-203ENST00000562609 GNAT3A8MTJ3 354 aa16.84■□□□□ 0.29
GTF3C1-203ENST00000562609 SLC4A10Q6U841 1118 aa16.84■□□□□ 0.29
GTF3C1-203ENST00000562609 ZFP91Q96JP5 570 aaPredicted RBP16.84■□□□□ 0.29
GTF3C1-203ENST00000562609 TRIM6-TRIM34B2RNG4 842 aa16.83■□□□□ 0.29
GTF3C1-203ENST00000562609 TRIM34Q9BYJ4 488 aa16.83■□□□□ 0.29
GTF3C1-203ENST00000562609 MORC2Q9Y6X9 1032 aaPredicted RBP16.83■□□□□ 0.29
GTF3C1-203ENST00000562609 ZNF142P52746 1687 aaPredicted RBP16.83■□□□□ 0.29
GTF3C1-203ENST00000562609 USP26Q9BXU7 913 aa16.83■□□□□ 0.28
GTF3C1-203ENST00000562609 KCNF1Q9H3M0 494 aa16.83■□□□□ 0.28
GTF3C1-203ENST00000562609 TULP2O00295 520 aa16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 HCLS1P14317 486 aaPredicted RBP16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 FOXD4L6Q3SYB3 417 aaPredicted RBP16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 FOXD4L3Q6VB84 417 aaPredicted RBP16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 GCC1Q96CN9 775 aa16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 CALCOCO1Q9P1Z2 691 aa16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 APBB1O00213 710 aa16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 HSPA2P54652 639 aa16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 NAA30Q147X3 362 aaPredicted RBP16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 IP6K1Q92551 441 aa16.82■□□□□ 0.28
GTF3C1-203ENST00000562609 GADD45BO75293 160 aaPredicted RBP16.81■□□□□ 0.28
GTF3C1-203ENST00000562609 GCP02774 474 aa16.81■□□□□ 0.28
GTF3C1-203ENST00000562609 TRERF1Q96PN7 1200 aa16.81■□□□□ 0.28
GTF3C1-203ENST00000562609 GDPD2Q9HCC8 539 aa16.81■□□□□ 0.28
GTF3C1-203ENST00000562609 GSPT1P15170 499 aaKnown RBP16.81■□□□□ 0.28
GTF3C1-203ENST00000562609 KIF18AQ8NI77 898 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 MEIS3Q99687 375 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 LGR6Q9HBX8 967 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 LTN1O94822 1766 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 NWD1Q149M9 1564 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 KIAA0232Q92628 1395 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 KDM4AO75164 1064 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 KRT222Q8N1A0 295 aa16.8■□□□□ 0.28
GTF3C1-203ENST00000562609 ZC3H6P61129 1189 aaKnown RBP16.79■□□□□ 0.28
GTF3C1-203ENST00000562609 RGS12O14924 1447 aa16.79■□□□□ 0.28
GTF3C1-203ENST00000562609 SYCP1Q15431 976 aa16.79■□□□□ 0.28
GTF3C1-203ENST00000562609 KRT28Q7Z3Y7 464 aa16.79■□□□□ 0.28
GTF3C1-203ENST00000562609 SPC24Q8NBT2 197 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms