RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 FCHSD2O94868 740 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 BCCIPQ9P287 314 aaKnown RBP eCLIP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 SPG7Q9UQ90 795 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 SMARCC1Q92922 1105 aaPredicted RBP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 BOLA2Q9H3K6 86 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 TTC12Q9H892 705 aaPredicted RBP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 SH2B1Q9NRF2 756 aaPredicted RBP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 F6X3S4 739 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 LIG1P18858 919 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 POLD1P28340 1107 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 ZNF165P49910 485 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 UVSSAQ2YD98 709 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 DYDC1Q8WWB3 177 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 NEMFO60524 1076 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 PPFIA3O75145 1194 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 NACAP1Q9BZK3 213 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 RRAGDQ9NQL2 400 aaPredicted RBP11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 INCENPQ9NQS7 918 aa11.88□□□□□ -0.51
GTF3C1-202ENST00000561623 DDX19AQ9NUU7 478 aaKnown RBP11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 PAXBP1Q9Y5B6 917 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 KIF6Q6ZMV9 814 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 SYNJ1O43426 1573 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 MPHOSPH10O00566 681 aaKnown RBP11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 STX1AQ16623 288 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 ZKSCAN5Q9Y2L8 839 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 PRIM1P49642 420 aaKnown RBP11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 MAP2K1Q02750 393 aaPredicted RBP11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 SPA17Q15506 151 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 BMP2KLQ5H9B9 411 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 KIF1BPQ96EK5 621 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 EHBP1L1Q8N3D4 1523 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 PDIA4P13667 645 aaKnown RBP11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 GSDMDP57764 484 aa11.87□□□□□ -0.51
GTF3C1-202ENST00000561623 CTR9Q6PD62 1173 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 C8orf37Q96NL8 207 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 NUP88Q99567 741 aaPredicted RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 CTNNA3Q9UI47 895 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 CNPY2Q9Y2B0 182 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 NAIPQ13075 1403 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 UBE2HP62256 183 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 CCT2P78371 535 aaKnown RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 ALDH1L2Q3SY69 923 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 VTI1AQ96AJ9 217 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC94Q9BW85 323 aaPredicted RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 DAPK1P53355 1430 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 GLRX3O76003 335 aaKnown RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 ZNF397Q8NF99 534 aaPredicted RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 TDO2P48775 406 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 IMMTQ16891 758 aaKnown RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC85AQ96PX6 553 aaPredicted RBP11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 NCOA1Q15788 1441 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 GOLGA6L10A0A0M3HER8 536 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 CTAGE5O15320 804 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 C8orf76Q96K31 380 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 UBAC1Q9BSL1 405 aa11.86□□□□□ -0.51
GTF3C1-202ENST00000561623 GPR162Q16538 588 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 ZNF530Q6P9A1 599 aaPredicted RBP11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC186Q7Z3E2 898 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 GTF2A1P52655 376 aaPredicted RBP11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 TMX3Q96JJ7 454 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 GNG11P61952 73 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 USP48Q86UV5 1035 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 SRRTQ9BXP5 876 aaKnown RBP11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 POLA1P09884 1462 aaPredicted RBP11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 HMGB2P26583 209 aaKnown RBP11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC57Q2TAC2 916 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC178Q5BJE1 867 aa11.85□□□□□ -0.51
GTF3C1-202ENST00000561623 GOPCQ9HD26 462 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 LUZP1Q86V48 1076 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC12Q8WUD4 166 aaPredicted RBP11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 MCM3P25205 808 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 MNAT1P51948 309 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 ANO6Q4KMQ2 910 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 CNNM3Q8NE01 707 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 FAM107BQ9H098 131 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC8Q9H0W5 538 aaPredicted RBP11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 RNF216Q9NWF9 866 aaPredicted RBP11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 SOGA3Q5TF21 947 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 BTBD11A6QL63 1104 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 IFFO1Q0D2I5 559 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 TTC22Q5TAA0 569 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 CEP131Q9UPN4 1083 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 IDH1O75874 414 aaKnown RBP11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 CCDC82Q8N4S0 544 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 WASF1Q92558 559 aa11.84□□□□□ -0.51
GTF3C1-202ENST00000561623 ZSCAN25Q6NSZ9 544 aa11.83□□□□□ -0.52
GTF3C1-202ENST00000561623 RSPH14Q9UHP6 348 aa11.83□□□□□ -0.52
GTF3C1-202ENST00000561623 MICALCLQ6ZW33 695 aa11.83□□□□□ -0.52
GTF3C1-202ENST00000561623 SKILP12757 684 aa11.83□□□□□ -0.52
GTF3C1-202ENST00000561623 CCDC171Q6TFL3 1326 aa11.83□□□□□ -0.52
GTF3C1-202ENST00000561623 GBP2P32456 591 aaPredicted RBP11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 POTEB2H3BUK9 544 aa11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 MATR3P43243 847 aaKnown RBP eCLIP11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 ANKRD18AQ8IVF6 992 aa11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 U3KPZ7 1027 aaPredicted RBP11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 ATP2C2O75185 946 aa11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 NESP48681 1621 aa11.82□□□□□ -0.52
GTF3C1-202ENST00000561623 ZSCAN22P10073 491 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms