RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TNS3Q68CZ2 1445 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 IGSF1Q8N6C5 1336 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 APPP05067 770 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 HCLS1P14317 486 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-209ENST00000560637 KIAA1211Q6ZU35 1233 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 KLHDC4Q8TBB5 520 aa6.72□□□□□ -1.33
VPS13C-209ENST00000560637 RTCBQ9Y3I0 505 aaKnown RBP6.72□□□□□ -1.33
VPS13C-209ENST00000560637 TTLL7Q6ZT98 887 aa6.71□□□□□ -1.33
VPS13C-209ENST00000560637 PIGBQ92521 554 aa6.71□□□□□ -1.33
VPS13C-209ENST00000560637 PA2G4Q9UQ80 394 aaKnown RBP6.71□□□□□ -1.33
VPS13C-209ENST00000560637 JAG2Q9Y219 1238 aa6.71□□□□□ -1.33
VPS13C-209ENST00000560637 SLC4A3P48751 1232 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 CCT4P50991 539 aaKnown RBP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 CHAF1AQ13111 956 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 PAXIP1Q6ZW49 1069 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 PLEKHF1Q96S99 279 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 CCDC8Q9H0W5 538 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 PDZRN3Q9UPQ7 1066 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 MTMR7Q9Y216 660 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 PTCH1Q13635 1447 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 ADGRB1O14514 1584 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 FKBP4Q02790 459 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 CLASRPQ8N2M8 674 aaKnown RBP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 GPATCH3Q96I76 525 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 GJD4Q96KN9 370 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-209ENST00000560637 HYPKQ9NX55 129 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 ZBTB1Q9Y2K1 713 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 DCCP43146 1447 aa6.71□□□□□ -1.34
VPS13C-209ENST00000560637 JCADQ9P266 1359 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 WASHC4Q2M389 1173 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 SNRKQ9NRH2 765 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 ANKARQ7Z5J8 1434 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 MYO5BQ9ULV0 1848 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 NPC1L1Q9UHC9 1359 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 SOS2Q07890 1332 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-209ENST00000560637 LOC102724428A0A0B4J2F2 783 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 CHL1O00533 1208 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 SIK1P57059 783 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 EIF4A1P60842 406 aaKnown RBP6.7□□□□□ -1.34
VPS13C-209ENST00000560637 ZNF772Q68DY9 489 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-209ENST00000560637 CENPQQ7L2Z9 268 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-209ENST00000560637 PDE3AQ14432 1141 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 LMBR1LQ6UX01 489 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 AACSQ86V21 672 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 SMARCC1Q92922 1105 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-209ENST00000560637 SETDB2Q96T68 719 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 TSHZ2Q9NRE2 1034 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 ABCF2Q9UG63 623 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 ZNF652Q9Y2D9 606 aa6.7□□□□□ -1.34
VPS13C-209ENST00000560637 USP19O94966 1318 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 MST1RQ04912 1400 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 METTL24Q5JXM2 366 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 FAM196AQ6ZSG2 479 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 MRPL50Q8N5N7 158 aaKnown RBP6.69□□□□□ -1.34
VPS13C-209ENST00000560637 ANKIB1Q9P2G1 1089 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 QRICH2Q9H0J4 1663 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 C6orf229H3BNL8 230 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 KDM4AO75164 1064 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 EN1Q05925 392 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-209ENST00000560637 PPP1R42Q7Z4L9 355 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 DEFB132Q7Z7B7 95 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 ANO2Q9NQ90 1003 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 DIAPH3Q9NSV4 1193 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 PSDA5PKW4 1024 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-209ENST00000560637 GIGYF1O75420 1035 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-209ENST00000560637 SLC4A8Q2Y0W8 1093 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 TRAPPC3LQ5T215 181 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 LDHAL6AQ6ZMR3 332 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 SLKQ9H2G2 1235 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-209ENST00000560637 CWC25Q9NXE8 425 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-209ENST00000560637 CEP126Q9P2H0 1117 aa6.69□□□□□ -1.34
VPS13C-209ENST00000560637 CPSF1Q10570 1443 aaKnown RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 IFIT5Q13325 482 aaKnown RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 SRP68Q9UHB9 627 aaKnown RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 ATF5Q9Y2D1 282 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 PCDHB15Q9Y5E8 787 aa6.68□□□□□ -1.34
VPS13C-209ENST00000560637 AATKQ6ZMQ8 1374 aa6.68□□□□□ -1.34
VPS13C-209ENST00000560637 FOXD4L5Q5VV16 416 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 MARCH10Q8NA82 808 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 FOXD4L4Q8WXT5 416 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 CDCA7Q9BWT1 371 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 BOLA2Q9H3K6 86 aa6.68□□□□□ -1.34
VPS13C-209ENST00000560637 NBPF7P0C2Y1 421 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 BAG6P46379 1132 aa6.68□□□□□ -1.34
VPS13C-209ENST00000560637 ALDH1L2Q3SY69 923 aa6.68□□□□□ -1.34
VPS13C-209ENST00000560637 FOXD4L6Q3SYB3 417 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 FOXD4L3Q6VB84 417 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 RPGRQ92834 1020 aaKnown RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 ZNF594Q96JF6 807 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 FSD1Q9BTV5 496 aa6.68□□□□□ -1.34
VPS13C-209ENST00000560637 TEX13AQ9BXU3 409 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 DDX21Q9NR30 783 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS13C-209ENST00000560637 IGHDP01880 384 aa6.67□□□□□ -1.34
VPS13C-209ENST00000560637 IGHMBP2P38935 993 aaKnown RBP6.67□□□□□ -1.34
VPS13C-209ENST00000560637 RBM5P52756 815 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS13C-209ENST00000560637 KSR2Q6VAB6 950 aa6.67□□□□□ -1.34
VPS13C-209ENST00000560637 CRKLP46109 303 aaKnown RBP6.67□□□□□ -1.34
VPS13C-209ENST00000560637 USPL1Q5W0Q7 1092 aa6.67□□□□□ -1.34
VPS13C-209ENST00000560637 PTF1AQ7RTS3 328 aa6.67□□□□□ -1.34
VPS13C-209ENST00000560637 CCDC87Q9NVE4 849 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms