RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 SGIP1Q9BQI5 828 aa12.31□□□□□ -0.44
LDLR-211ENST00000560173 TRIM35Q9UPQ4 493 aa12.31□□□□□ -0.44
LDLR-211ENST00000560173 COL24A1Q17RW2 1714 aa12.31□□□□□ -0.44
LDLR-211ENST00000560173 KDM3BQ7LBC6 1761 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 APAF1O14727 1248 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 MSH5O43196 834 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 RPS6KA4O75676 772 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 ADRA2BP18089 450 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 CCDC87Q9NVE4 849 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 MIS18AQ9NYP9 233 aa12.3□□□□□ -0.44
LDLR-211ENST00000560173 RTCBQ9Y3I0 505 aaKnown RBP12.3□□□□□ -0.44
LDLR-211ENST00000560173 DIEXFQ68CQ4 756 aaKnown RBP12.29□□□□□ -0.44
LDLR-211ENST00000560173 TEX13AQ9BXU3 409 aaPredicted RBP12.29□□□□□ -0.44
LDLR-211ENST00000560173 STARD3NLO95772 234 aa12.28□□□□□ -0.44
LDLR-211ENST00000560173 TRAPPC3LQ5T215 181 aa12.28□□□□□ -0.44
LDLR-211ENST00000560173 BABAM1Q9NWV8 329 aa12.28□□□□□ -0.44
LDLR-211ENST00000560173 ZBTB1Q9Y2K1 713 aa12.28□□□□□ -0.44
LDLR-211ENST00000560173 SOS1Q07889 1333 aaPredicted RBP12.28□□□□□ -0.44
LDLR-211ENST00000560173 SNRPA1P09661 255 aaKnown RBP12.27□□□□□ -0.45
LDLR-211ENST00000560173 EIF4A1P60842 406 aaKnown RBP12.27□□□□□ -0.45
LDLR-211ENST00000560173 MSL1Q68DK7 614 aa12.27□□□□□ -0.45
LDLR-211ENST00000560173 ARHGEF1Q92888 912 aaKnown RBP12.27□□□□□ -0.45
LDLR-211ENST00000560173 TSPYL4Q9UJ04 414 aa12.27□□□□□ -0.45
LDLR-211ENST00000560173 C4AP0C0L4 1744 aa12.27□□□□□ -0.45
LDLR-211ENST00000560173 PRAMEF22A3QJZ6 481 aa12.26□□□□□ -0.45
LDLR-211ENST00000560173 POLD1P28340 1107 aa12.26□□□□□ -0.45
LDLR-211ENST00000560173 ARXQ96QS3 562 aa12.26□□□□□ -0.45
LDLR-211ENST00000560173 COL15A1P39059 1388 aa12.26□□□□□ -0.45
LDLR-211ENST00000560173 CHL1O00533 1208 aa12.25□□□□□ -0.45
LDLR-211ENST00000560173 CANXP27824 592 aaKnown RBP12.25□□□□□ -0.45
LDLR-211ENST00000560173 RFC4P35249 363 aa12.25□□□□□ -0.45
LDLR-211ENST00000560173 GPR162Q16538 588 aa12.25□□□□□ -0.45
LDLR-211ENST00000560173 USP16Q9Y5T5 823 aa12.25□□□□□ -0.45
LDLR-211ENST00000560173 USP42Q9H9J4 1324 aaKnown RBP12.25□□□□□ -0.45
LDLR-211ENST00000560173 LAMB4A4D0S4 1761 aa12.25□□□□□ -0.45
LDLR-211ENST00000560173 CCER2I3L3R5 266 aa12.24□□□□□ -0.45
LDLR-211ENST00000560173 A1BGP04217 495 aa12.24□□□□□ -0.45
LDLR-211ENST00000560173 GYS1P13807 737 aa12.24□□□□□ -0.45
LDLR-211ENST00000560173 EIF5P55010 431 aaKnown RBP12.24□□□□□ -0.45
LDLR-211ENST00000560173 FAM9BQ8IZU0 186 aa12.24□□□□□ -0.45
LDLR-211ENST00000560173 SRP68Q9UHB9 627 aaKnown RBP12.24□□□□□ -0.45
LDLR-211ENST00000560173 ZNF853P0CG23 659 aa12.23□□□□□ -0.45
LDLR-211ENST00000560173 IL6STP40189 918 aaPredicted RBP12.23□□□□□ -0.45
LDLR-211ENST00000560173 CALD1Q05682 793 aaKnown RBP12.23□□□□□ -0.45
LDLR-211ENST00000560173 CCDC27Q2M243 656 aa12.23□□□□□ -0.45
LDLR-211ENST00000560173 NCBP3Q53F19 620 aaKnown RBP12.23□□□□□ -0.45
LDLR-211ENST00000560173 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
LDLR-211ENST00000560173 NBPF26B4DH59 902 aa12.22□□□□□ -0.45
LDLR-211ENST00000560173 NBPF10Q6P3W6 841 aaKnown RBP12.22□□□□□ -0.45
LDLR-211ENST00000560173 NLGN1Q8N2Q7 840 aa12.22□□□□□ -0.45
LDLR-211ENST00000560173 NBPF15Q8N660 670 aa12.22□□□□□ -0.45
LDLR-211ENST00000560173 IFT57Q9NWB7 429 aa12.22□□□□□ -0.45
LDLR-211ENST00000560173 NARFQ9UHQ1 456 aa12.22□□□□□ -0.45
LDLR-211ENST00000560173 LAS1LQ9Y4W2 734 aaKnown RBP12.22□□□□□ -0.45
LDLR-211ENST00000560173 A0A087WZG4 1122 aa12.21□□□□□ -0.45
LDLR-211ENST00000560173 MMP10P09238 476 aa12.21□□□□□ -0.45
LDLR-211ENST00000560173 PIP4K2AP48426 406 aaPredicted RBP12.21□□□□□ -0.45
LDLR-211ENST00000560173 FKBP8Q14318 412 aa12.21□□□□□ -0.45
LDLR-211ENST00000560173 WWC1Q8IX03 1113 aa12.21□□□□□ -0.45
LDLR-211ENST00000560173 MBIPQ9NS73 344 aa12.21□□□□□ -0.45
LDLR-211ENST00000560173 SCN7AQ01118 1682 aa12.2□□□□□ -0.46
LDLR-211ENST00000560173 ZPR1O75312 459 aa12.2□□□□□ -0.46
LDLR-211ENST00000560173 GNAI1P63096 354 aa12.2□□□□□ -0.46
LDLR-211ENST00000560173 KRT24Q2M2I5 525 aa12.2□□□□□ -0.46
LDLR-211ENST00000560173 USPL1Q5W0Q7 1092 aa12.2□□□□□ -0.46
LDLR-211ENST00000560173 BCL2L12Q9HB09 334 aa12.2□□□□□ -0.46
LDLR-211ENST00000560173 ZNF330Q9Y3S2 320 aaPredicted RBP12.2□□□□□ -0.46
LDLR-211ENST00000560173 ERBB4Q15303 1308 aa12.19□□□□□ -0.46
LDLR-211ENST00000560173 IL16Q14005 1332 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 CAMTA2O94983 1202 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 HOXB7P09629 217 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 DDR1Q08345 913 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 PELP1Q8IZL8 1130 aaKnown RBP12.18□□□□□ -0.46
LDLR-211ENST00000560173 MIER1Q8N108 512 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 NGEFQ8N5V2 710 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 TBC1D2BQ9UPU7 963 aa12.18□□□□□ -0.46
LDLR-211ENST00000560173 TM4SF1P30408 202 aa12.17□□□□□ -0.46
LDLR-211ENST00000560173 NPM2Q86SE8 214 aaKnown RBP12.17□□□□□ -0.46
LDLR-211ENST00000560173 DZIP3Q86Y13 1208 aaKnown RBP12.17□□□□□ -0.46
LDLR-211ENST00000560173 KLHL34Q8N239 644 aa12.17□□□□□ -0.46
LDLR-211ENST00000560173 SALL2Q9Y467 1007 aaPredicted RBP12.17□□□□□ -0.46
LDLR-211ENST00000560173 BCORQ6W2J9 1755 aa12.17□□□□□ -0.46
LDLR-211ENST00000560173 EIF2S2P20042 333 aaKnown RBP12.16□□□□□ -0.46
LDLR-211ENST00000560173 NFIXQ14938 502 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 PDIA6Q15084 440 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 DUSP27Q5VZP5 1158 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 LRP10Q7Z4F1 713 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 WDR63Q8IWG1 891 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 CD2APQ9Y5K6 639 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 PARP3Q9Y6F1 533 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 C10orf71Q711Q0 1435 aa12.16□□□□□ -0.46
LDLR-211ENST00000560173 POLRMTO00411 1230 aaKnown RBP12.15□□□□□ -0.46
LDLR-211ENST00000560173 RGL2O15211 777 aa12.15□□□□□ -0.46
LDLR-211ENST00000560173 MYL6BP14649 208 aa12.15□□□□□ -0.46
LDLR-211ENST00000560173 PROSER3Q2NL68 480 aa12.15□□□□□ -0.46
LDLR-211ENST00000560173 NLGN2Q8NFZ4 835 aa12.15□□□□□ -0.46
LDLR-211ENST00000560173 TSR2Q969E8 191 aaKnown RBP12.15□□□□□ -0.46
LDLR-211ENST00000560173 ZNF521Q96K83 1311 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 ATP10DQ9P241 1426 aa12.14□□□□□ -0.47
LDLR-211ENST00000560173 HSPA6P17066 643 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms