RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RUFY3Q7L099 469 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 MED14O60244 1454 aa13.53□□□□□ -0.24
LDLR-208ENST00000558518 HSP90B1P14625 803 aaKnown RBP13.52□□□□□ -0.24
LDLR-208ENST00000558518 ADCK5Q3MIX3 580 aa13.52□□□□□ -0.24
LDLR-208ENST00000558518 ANO6Q4KMQ2 910 aa13.52□□□□□ -0.24
LDLR-208ENST00000558518 NUP62CLQ9H1M0 184 aa13.52□□□□□ -0.24
LDLR-208ENST00000558518 DACT1Q9NYF0 836 aa13.52□□□□□ -0.24
LDLR-208ENST00000558518 CHL1O00533 1208 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 LIG1P18858 919 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 DMTNQ08495 405 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 NCBP3Q53F19 620 aaKnown RBP13.52□□□□□ -0.25
LDLR-208ENST00000558518 KCNF1Q9H3M0 494 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 SHROOM2Q13796 1616 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 CUL4AQ13619 759 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 ATP10DQ9P241 1426 aa13.52□□□□□ -0.25
LDLR-208ENST00000558518 GORABQ5T7V8 394 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 FMNL2Q96PY5 1086 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 HDGFL1Q5TGJ6 251 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 CNTROBQ8N137 903 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 DNAJC25Q9H1X3 360 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 PA2G4Q9UQ80 394 aaKnown RBP13.51□□□□□ -0.25
LDLR-208ENST00000558518 PTPRCP08575 1304 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 VGLL3A8MV65 326 aa13.51□□□□□ -0.25
LDLR-208ENST00000558518 INTS4Q96HW7 963 aaKnown RBP13.51□□□□□ -0.25
LDLR-208ENST00000558518 GLI2P10070 1586 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 ZCCHC11Q5TAX3 1644 aaKnown RBP13.5□□□□□ -0.25
LDLR-208ENST00000558518 WASLO00401 505 aaPredicted RBP13.5□□□□□ -0.25
LDLR-208ENST00000558518 MAP3K11Q16584 847 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 ESF1Q9H501 851 aaKnown RBP13.5□□□□□ -0.25
LDLR-208ENST00000558518 ADGRB2O60241 1585 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 PTH1RQ03431 593 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 COL3A1P02461 1466 aaPredicted RBP13.5□□□□□ -0.25
LDLR-208ENST00000558518 CCDC112Q8NEF3 446 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 LRRC2Q9BYS8 371 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 CYP46A1Q9Y6A2 500 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 CCDC61Q9Y6R9 512 aa13.5□□□□□ -0.25
LDLR-208ENST00000558518 CDK11BP21127 795 aaKnown RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 AIMP1Q12904 312 aaKnown RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 ARID5BQ14865 1188 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 CDC37L1Q7L3B6 337 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 RHPN1Q8TCX5 695 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 EFCAB6Q5THR3 1501 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 GOLGA6L19H0YKK7 550 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 RAB11FIP3O75154 756 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 ATP8B2P98198 1209 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 TAF7Q15545 349 aaPredicted RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 UVSSAQ2YD98 709 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 CCDC30Q5VVM6 783 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 SPATA32Q96LK8 384 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 PPRC1Q5VV67 1664 aaKnown RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 ADGRB1O14514 1584 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 PIK3R4Q99570 1358 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 IFIT2P09913 472 aaKnown RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 TYRO3Q06418 890 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 NGDNQ8NEJ9 315 aaKnown RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 KIAA1524Q8TCG1 905 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 CCDC8Q9H0W5 538 aaPredicted RBP13.49□□□□□ -0.25
LDLR-208ENST00000558518 SLC52A1Q9NWF4 448 aa13.49□□□□□ -0.25
LDLR-208ENST00000558518 H3BQV1 296 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 NBPF7P0C2Y1 421 aaPredicted RBP13.48□□□□□ -0.25
LDLR-208ENST00000558518 ZKSCAN1P17029 563 aaPredicted RBP13.48□□□□□ -0.25
LDLR-208ENST00000558518 KRT85P78386 507 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 IFFO2Q5TF58 517 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 BECN2A8MW95 431 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 HSPA4P34932 840 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 GUCY1B3Q02153 619 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 CLIP2Q9UDT6 1046 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 NDUFB9Q9Y6M9 179 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 PNPLA6Q8IY17 1366 aa13.48□□□□□ -0.25
LDLR-208ENST00000558518 LETM1O95202 739 aaPredicted RBP13.47□□□□□ -0.25
LDLR-208ENST00000558518 COL9A3Q14050 684 aaPredicted RBP13.47□□□□□ -0.25
LDLR-208ENST00000558518 TTC6Q86TZ1 520 aa13.47□□□□□ -0.25
LDLR-208ENST00000558518 BBXQ8WY36 941 aaPredicted RBP13.47□□□□□ -0.25
LDLR-208ENST00000558518 PUS7Q96PZ0 661 aaKnown RBP13.47□□□□□ -0.25
LDLR-208ENST00000558518 C9orf78Q9NZ63 289 aaPredicted RBP13.47□□□□□ -0.25
LDLR-208ENST00000558518 CAMSAP1Q5T5Y3 1602 aa13.47□□□□□ -0.25
LDLR-208ENST00000558518 POGZQ7Z3K3 1410 aa13.47□□□□□ -0.25
LDLR-208ENST00000558518 ZNF165P49910 485 aa13.47□□□□□ -0.25
LDLR-208ENST00000558518 BOLA2Q9H3K6 86 aa13.47□□□□□ -0.25
LDLR-208ENST00000558518 ANAPC15P60006 121 aa13.46□□□□□ -0.25
LDLR-208ENST00000558518 CHD1O14646 1710 aa13.46□□□□□ -0.25
LDLR-208ENST00000558518 ME3Q16798 604 aa13.46□□□□□ -0.25
LDLR-208ENST00000558518 USP44Q9H0E7 712 aa13.46□□□□□ -0.25
LDLR-208ENST00000558518 MTMR6Q9Y217 621 aa13.46□□□□□ -0.25
LDLR-208ENST00000558518 SOS1Q07889 1333 aaPredicted RBP13.46□□□□□ -0.25
LDLR-208ENST00000558518 RPAP1Q9BWH6 1393 aaPredicted RBP13.46□□□□□ -0.25
LDLR-208ENST00000558518 ARHGEF40Q8TER5 1519 aa13.46□□□□□ -0.25
LDLR-208ENST00000558518 AACSQ86V21 672 aa13.46□□□□□ -0.26
LDLR-208ENST00000558518 FAM227BQ96M60 508 aa13.46□□□□□ -0.26
LDLR-208ENST00000558518 CBX8Q9HC52 389 aa13.46□□□□□ -0.26
LDLR-208ENST00000558518 MAP3K19Q56UN5 1328 aa13.46□□□□□ -0.26
LDLR-208ENST00000558518 ASXL2Q76L83 1435 aa13.46□□□□□ -0.26
LDLR-208ENST00000558518 SGSM2O43147 1006 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 LMOD2Q6P5Q4 547 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 PI4KAP2A4QPH2 592 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 CLASRPQ8N2M8 674 aaKnown RBP13.45□□□□□ -0.26
LDLR-208ENST00000558518 PI4KAP1Q8N8J0 262 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 FAM200AQ8TCP9 573 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 KIAA1210Q9ULL0 1709 aa13.45□□□□□ -0.26
LDLR-208ENST00000558518 ZFYVE9O95405 1425 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms