RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TCEANC2Q96MN5 208 aa14.95□□□□□ -0.02
LDLR-205ENST00000557933 SRCIN1Q9C0H9 1055 aa14.95□□□□□ -0.02
LDLR-205ENST00000557933 PRR36Q9H6K5 1346 aa14.94□□□□□ -0.02
LDLR-205ENST00000557933 CWC27Q6UX04 472 aaKnown RBP14.94□□□□□ -0.02
LDLR-205ENST00000557933 USHBP1Q8N6Y0 703 aa14.94□□□□□ -0.02
LDLR-205ENST00000557933 ADGRL3Q9HAR2 1447 aa14.94□□□□□ -0.02
LDLR-205ENST00000557933 IBTKQ9P2D0 1353 aaPredicted RBP14.94□□□□□ -0.02
LDLR-205ENST00000557933 GNAI2P04899 355 aa14.94□□□□□ -0.02
LDLR-205ENST00000557933 STRCP1A6NGW2 1772 aa14.94□□□□□ -0.02
LDLR-205ENST00000557933 ZNF500O60304 480 aaPredicted RBP14.93□□□□□ -0.02
LDLR-205ENST00000557933 KCNA6P17658 529 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 FERMT3Q86UX7 667 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 DCCP43146 1447 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 LARGE1O95461 756 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 RASEFQ8IZ41 740 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 PHAXQ9H814 394 aaKnown RBP14.93□□□□□ -0.02
LDLR-205ENST00000557933 CCDC39Q9UFE4 941 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 CCDC61Q9Y6R9 512 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 MAP3K19Q56UN5 1328 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 ADCY5O95622 1261 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 SLC26A8Q96RN1 970 aa14.93□□□□□ -0.02
LDLR-205ENST00000557933 SURF6O75683 361 aaKnown RBP14.92□□□□□ -0.02
LDLR-205ENST00000557933 CBX1P83916 185 aa14.92□□□□□ -0.02
LDLR-205ENST00000557933 FLIIQ13045 1269 aa14.92□□□□□ -0.02
LDLR-205ENST00000557933 CAMK4Q16566 473 aa14.92□□□□□ -0.02
LDLR-205ENST00000557933 STK31Q9BXU1 1019 aa14.92□□□□□ -0.02
LDLR-205ENST00000557933 EDC4Q6P2E9 1401 aaKnown RBP14.91□□□□□ -0.02
LDLR-205ENST00000557933 KIAA2012Q0VF49 1180 aa14.91□□□□□ -0.02
LDLR-205ENST00000557933 VPS37CA5D8V6 355 aaPredicted RBP14.91□□□□□ -0.02
LDLR-205ENST00000557933 SPDYE4A6NLX3 237 aa14.91□□□□□ -0.02
LDLR-205ENST00000557933 NECAB1Q8N987 351 aa14.91□□□□□ -0.02
LDLR-205ENST00000557933 KIF1AQ12756 1690 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 PPFIA3O75145 1194 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 MCCP23508 829 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 C14orf37Q86TY3 774 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 CCDC83Q8IWF9 413 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 TCHHQ07283 1943 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 DLG5Q8TDM6 1919 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 MBD3O95983 291 aa14.9□□□□□ -0.02
LDLR-205ENST00000557933 ACEP12821 1306 aa14.89□□□□□ -0.03
LDLR-205ENST00000557933 AP5Z1O43299 807 aa14.89□□□□□ -0.03
LDLR-205ENST00000557933 AK2P54819 239 aa14.89□□□□□ -0.03
LDLR-205ENST00000557933 DNM1Q05193 864 aaKnown RBP14.89□□□□□ -0.03
LDLR-205ENST00000557933 PLEKHG3A1L390 1219 aa14.89□□□□□ -0.03
LDLR-205ENST00000557933 SASS6Q6UVJ0 657 aa14.88□□□□□ -0.03
LDLR-205ENST00000557933 XIRP1Q702N8 1843 aaKnown RBP14.88□□□□□ -0.03
LDLR-205ENST00000557933 CASTP20810 708 aaKnown RBP14.87□□□□□ -0.03
LDLR-205ENST00000557933 SSH2Q76I76 1423 aa14.87□□□□□ -0.03
LDLR-205ENST00000557933 RGPD8O14715 1765 aaPredicted RBP14.87□□□□□ -0.03
LDLR-205ENST00000557933 PTPRCP08575 1304 aa14.87□□□□□ -0.03
LDLR-205ENST00000557933 NBPF7P0C2Y1 421 aaPredicted RBP14.87□□□□□ -0.03
LDLR-205ENST00000557933 SYT1P21579 422 aa14.87□□□□□ -0.03
LDLR-205ENST00000557933 AMPHP49418 695 aa14.87□□□□□ -0.03
LDLR-205ENST00000557933 OS9Q13438 667 aaPredicted RBP14.87□□□□□ -0.03
LDLR-205ENST00000557933 ADCK5Q3MIX3 580 aa14.87□□□□□ -0.03
LDLR-205ENST00000557933 PPP1R42Q7Z4L9 355 aa14.87□□□□□ -0.03
LDLR-205ENST00000557933 RBM33Q96EV2 1170 aaKnown RBP14.87□□□□□ -0.03
LDLR-205ENST00000557933 SRGAP3O43295 1099 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 FOSBP53539 338 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 NOLC1Q14978 699 aaKnown RBP eCLIP14.86□□□□□ -0.039e-6■□□□□ 9.6
LDLR-205ENST00000557933 UBTFL1P0CB47 393 aaPredicted RBP14.86□□□□□ -0.03
LDLR-205ENST00000557933 RUFY3Q7L099 469 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 PYCARDQ9ULZ3 195 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 TTC21BQ7Z4L5 1316 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 CUL4AQ13619 759 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 CKAP2LQ8IYA6 745 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 ZNF710Q8N1W2 664 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 USP44Q9H0E7 712 aa14.86□□□□□ -0.03
LDLR-205ENST00000557933 CCT4P50991 539 aaKnown RBP14.85□□□□□ -0.03
LDLR-205ENST00000557933 HS1BP3Q53T59 392 aa14.85□□□□□ -0.03
LDLR-205ENST00000557933 EYA1Q99502 592 aa14.85□□□□□ -0.03
LDLR-205ENST00000557933 CCDC9Q9Y3X0 531 aaKnown RBP14.85□□□□□ -0.03
LDLR-205ENST00000557933 SNX14Q9Y5W7 946 aa14.85□□□□□ -0.03
LDLR-205ENST00000557933 SOS1Q07889 1333 aaPredicted RBP14.85□□□□□ -0.03
LDLR-205ENST00000557933 TAOK2Q9UL54 1235 aa14.85□□□□□ -0.03
LDLR-205ENST00000557933 PA2G4Q9UQ80 394 aaKnown RBP14.85□□□□□ -0.03
LDLR-205ENST00000557933 A0A087WWV3 80 aa14.84□□□□□ -0.03
LDLR-205ENST00000557933 STK3Q13188 491 aa14.84□□□□□ -0.03
LDLR-205ENST00000557933 PRPF40BQ6NWY9 871 aaKnown RBP14.84□□□□□ -0.03
LDLR-205ENST00000557933 SYAP1Q96A49 352 aaPredicted RBP14.84□□□□□ -0.03
LDLR-205ENST00000557933 RPAP1Q9BWH6 1393 aaPredicted RBP14.84□□□□□ -0.03
LDLR-205ENST00000557933 PTH1RQ03431 593 aa14.84□□□□□ -0.03
LDLR-205ENST00000557933 CSPP1Q1MSJ5 1256 aa14.84□□□□□ -0.03
LDLR-205ENST00000557933 SMC3Q9UQE7 1217 aa14.84□□□□□ -0.03
LDLR-205ENST00000557933 SALL3Q9BXA9 1300 aa14.84□□□□□ -0.03
LDLR-205ENST00000557933 CDK12Q9NYV4 1490 aaPredicted RBP14.83□□□□□ -0.03
LDLR-205ENST00000557933 STX6O43752 255 aa14.83□□□□□ -0.03
LDLR-205ENST00000557933 FBXW7Q969H0 707 aa14.83□□□□□ -0.03
LDLR-205ENST00000557933 JAKMIP1Q96N16 626 aaKnown RBP14.83□□□□□ -0.03
LDLR-205ENST00000557933 TFIP11Q9UBB9 837 aaKnown RBP14.83□□□□□ -0.03
LDLR-205ENST00000557933 PRDM4Q9UKN5 801 aa14.83□□□□□ -0.03
LDLR-205ENST00000557933 MST1RQ04912 1400 aa14.83□□□□□ -0.04
LDLR-205ENST00000557933 WDR33Q9C0J8 1336 aaKnown RBP14.83□□□□□ -0.04
LDLR-205ENST00000557933 ATP8B2P98198 1209 aa14.83□□□□□ -0.04
LDLR-205ENST00000557933 OSBPL3Q9H4L5 887 aa14.83□□□□□ -0.04
LDLR-205ENST00000557933 USP6P35125 1406 aa14.83□□□□□ -0.04
LDLR-205ENST00000557933 KCNQ3O43525 872 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 GJB2P29033 226 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 HDGFL1Q5TGJ6 251 aa14.82□□□□□ -0.04
LDLR-205ENST00000557933 DYNC1I1O14576 645 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms